Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30385
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 101 7e-22
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9642| Best HMM Match : PSI (HMM E-Value=3.6) 29 4.4
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 4.4
SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.7
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 7.7
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 7.7
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 7.7
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.7
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 101 bits (241), Expect = 7e-22
Identities = 47/68 (69%), Positives = 56/68 (82%)
Frame = -1
Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENA 277
VIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK
Sbjct: 79 VIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK--- 135
Query: 276 KPRHKAPR 253
K + KAP+
Sbjct: 136 KAKSKAPK 143
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/53 (47%), Positives = 31/53 (58%)
Frame = -3
Query: 253 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 95
IQRLVTPVVLQ K A+YAKLLA+R KE+K +R E++
Sbjct: 144 IQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 196
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 363 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPR 253
+ F+++KEDD+ Y++ L + K NA ++ PR
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPR 173
>SB_9642| Best HMM Match : PSI (HMM E-Value=3.6)
Length = 165
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 583 HQKANQPESLHLVVLYQEKXRLYDFLKLPRTITSRLVPNSAP 458
+Q+ QP LH + L RL++F + RT+ S L P +P
Sbjct: 96 NQRCLQPALLHCLALLFSAYRLFEFALIRRTLGSPL-PGESP 136
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 411 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 313
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 114 CVARKRSNAGGQLQCVIPRALARVSAKVIYCILNKKY 4
C+ R+ + G+L+ V+PR A + C+ N+KY
Sbjct: 107 CLRRRTIDQIGKLESVLPRKKTVKVAVSVECLTNEKY 143
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 262 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 348
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 262 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 348
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 262 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 348
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = -1
Query: 444 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 286
+GA+++P L +G V P + G K R++ +++L E DVR + RV ++
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326
Query: 285 ENAKPRHKAP 256
A P+ P
Sbjct: 327 PPATPQEADP 336
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 262 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 348
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 378 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 268
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,163
Number of Sequences: 59808
Number of extensions: 361451
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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