Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30385
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    74   1e-13
U97406-1|AAC24294.1|  141|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   8.9  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/47 (72%), Positives = 40/47 (85%)
 Frame = -1

Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 316
           VIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 112 VIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>U97406-1|AAC24294.1|  141|Caenorhabditis elegans Hypothetical
           protein F40E3.3 protein.
          Length = 141

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 583 HQKANQPESLHLVVL-YQEKXRLYDFLKLPRTITSRLVPNSAPGYCAQ-GCPGNSWID*W 410
           H   +  + LHL +L + +K   +   + PR+ +S L  + APG+C + G       D +
Sbjct: 20  HHIRHLHQLLHLELLDFLQKSDFFPLYRPPRSPSSSLSSSPAPGFCRKFGFFSLCQSDLY 79

Query: 409 KCTPPSRSQT 380
             +PP+ S T
Sbjct: 80  ISSPPTSSST 89


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 86  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 223
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK938.2 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 436 GTLAHNNLVPNSARVVTLLCAGVSKNHII 522
           GT+   N  P  AR VT+ C G S+ ++I
Sbjct: 27  GTVVLTNKTPLDARCVTIKCRGKSETYLI 55


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 122 FLLSLCKQFSIFSLRGLALSETLLL 196
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 435 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 262
           Q  P + D N   R  PK   K  K+ +LS  E+D +  V     P+KE KE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,246
Number of Sequences: 27780
Number of extensions: 269871
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)