Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30385
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              79   2e-15
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    79   3e-15
At2g24910.1 68415.m02978 hypothetical protein                          32   0.39 
At2g12700.1 68415.m01375 hypothetical protein                          31   0.90 
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.2  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    28   4.8  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.3  
At5g39440.1 68418.m04777 Snf1-related protein kinase, putative s...    27   8.4  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
 Frame = -1

Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 283
           VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+
Sbjct: 114 VIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKK 173

Query: 282 NAK 274
            +K
Sbjct: 174 VSK 176



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = -3

Query: 253 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 95
           IQRLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 180 IQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
 Frame = -1

Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 283
           VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE 173

Query: 282 NAK 274
            +K
Sbjct: 174 VSK 176



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = -3

Query: 253 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 95
           IQRLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 180 IQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At2g24910.1 68415.m02978 hypothetical protein 
          Length = 155

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 371 LEARLGPRRRGTFPSVNPGI-SWAPLRTITWCRIRHE 478
           +EA L    R   P +NPG+ +W    T+TW +  HE
Sbjct: 13  VEAVLTAPDRADLPVLNPGLGTWVDKTTVTWFKFNHE 49


>At2g12700.1 68415.m01375 hypothetical protein 
          Length = 151

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 371 LEARLGPRRRGTFPSVNPGI-SWAPLRTITWCRIRHE 478
           +EA L    R   P +NPG+ +W    T+TW +  H+
Sbjct: 13  VEAVLTAPDRADLPVLNPGLGTWVDKTTVTWFKFNHQ 49


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 420 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 274
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 462 HQVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 289
           H+ +   GA   PG       +P R+G  R +KIRKL  +  + ++   ++K  LP K G
Sbjct: 195 HRALGSIGAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIVKVDKELNVVMIKGALPGKPG 253


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 432 EIPGLTDGNVPRRLGPKRASKIRKL 358
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At5g39440.1 68418.m04777 Snf1-related protein kinase, putative
           similar to SNF1-related protein kinase KIN10 (EC
           2.7.1.-) (AKIN10) [Arabidopsis thaliana]
           SWISS-PROT:Q38997
          Length = 494

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = -3

Query: 631 DLMVFGFLLRHDIAEQHQKANQPESLHLVVLYQEKXRLYDFL 506
           ++ +  FL+   I  Q++    P  +++V+ Y +   L+D++
Sbjct: 67  EIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYI 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,888
Number of Sequences: 28952
Number of extensions: 250893
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)