Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30383
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 4e-21
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 0.63
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 25 1.6
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 30 2.2
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.8
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.1
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 6.7
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 6.7
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 6.7
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 25 9.7
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 28 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 207
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 306 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 485
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 486 VK 491
VK
Sbjct: 703 VK 704
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 25.0 bits (52), Expect(2) = 0.63
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 44 SKTHTLRPETPGPQPPSPCNVRPCV 118
SK+H ++ T GP+ SP N R +
Sbjct: 4412 SKSHPMQARTQGPRTHSPYNGRKSI 4436
Score = 25.0 bits (52), Expect(2) = 0.63
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 164 KCPHPKPESTATLKFTWLGLISSMVKSMKILSLHTQ-HGRTPREARRL 304
K P P ++ FTW ISS+ SM+ + Q +G EA RL
Sbjct: 4474 KNPGYGPAKELSIAFTWGFSISSLRSSMQFFNCKQQKYGGKRAEAGRL 4521
>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 140 RVVHARLLKCPHPKPESTATLKFTWLGLISSMV--KSMKILSLHTQHGRTP 286
R A L C P + L F WL ++ ++ +++++++L HG+TP
Sbjct: 361 RTTEALLNVCDLPMGQWEDCLTFGWLEIVDDLLVGRNVRMINLKNNHGKTP 411
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 25.0 bits (52), Expect(2) = 1.6
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 92 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKILSLHTQ 271
+PC ++ C + +S+ V ++K P P TL ++G + +KI+ T+
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIG---HQARKLKIVKYQTK 454
Query: 272 H 274
+
Sbjct: 455 N 455
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 74 PGPQPPSPCNVRP 112
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 288 RGVRPCCVWRDNIFIL 241
R RPCC WR N+F L
Sbjct: 304 RDARPCCWWRQNVFSL 319
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 41 TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 175
T+K HT +P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 5 LTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 115
L K KT + T+K +T +P T P+ P +PC
Sbjct: 96 LYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 29 QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 184
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 285 GVRPCCVWRDNIFILFTIEDINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 112
G+R C D++ +F + + + S A ++ +G GH N + L H + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 312 SVGSLRASRGVRPCCVWRDNIFILFTIEDINPNQVNFSVAVLS 184
++G L G P + RD ++ TIEDIN N F+ +V S
Sbjct: 1292 TLGILATDNG-EPPQLSRDPAIVVITIEDINDNYPEFNASVYS 1333
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 118 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 237
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 397 SAHSCVLTSTAARNCCAPC*NPAVRSASSPSKQTQLSKI 513
SAH+C S +AR+ P +P++ S SK SKI
Sbjct: 272 SAHNCKRASPSARSSPTPSESPSLSKIPSSSKTLSPSKI 310
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 466 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 335
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 130 RNRFYAGPNIAW--GRWLRPRSLRSQSV 53
R F+ PN+A G+WL P+SLR+ V
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASRV 974
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 8 TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 112
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 724 RLRNASAK*GGEVLRVTSARGRAPRSPSTTSV 629
R+R+AS K GGE + + SA GR+ + SV
Sbjct: 338 RIRSASPKDGGEYMCIVSASGRSMTHSTFLSV 369
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 273 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 440
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 441 LCTVLKSCGEEC 476
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 25.0 bits (52), Expect(2) = 9.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 47 KTHTLRPETPGPQPPSP 97
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
Score = 21.0 bits (42), Expect(2) = 9.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 71 TPGPQPPSPCNVRPCVKT 124
T GP PP+ N +P T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,788,471
Number of Sequences: 59808
Number of extensions: 519133
Number of successful extensions: 1605
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -