Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30383
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 129 2e-30
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 118 6e-27
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.84
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 2.6
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 2.6
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 2.6
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 2.6
AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical ... 29 3.4
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 4.5
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 7.8
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 129 bits (312), Expect = 2e-30
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +1
Query: 46 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 225
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 226 IFNGKKYEDIVP 261
IF KK EDI P
Sbjct: 67 IFTSKKLEDICP 78
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +3
Query: 255 CPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSG 431
CPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG Q+R ++
Sbjct: 77 CPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKD 135
Query: 432 K-ELLCTVLKSCGEECVIAVKANT 500
+ +L V+ + GEE ++ K +T
Sbjct: 136 EGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 118 bits (283), Expect = 6e-27
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +1
Query: 46 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 225
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 226 IFNGKKYEDIVP 261
IF KK EDI P
Sbjct: 101 IFTTKKLEDICP 112
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +3
Query: 255 CPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSG 431
CPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG +R +
Sbjct: 111 CPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEKD 169
Query: 432 K-ELLCTVLKSCGEECVIAVKANT 500
+ +L V+ +CGEE ++ K +T
Sbjct: 170 EGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 270 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 440
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 441 LCTVLKSCGEEC 476
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 11 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 127
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 11 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 127
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 11 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 127
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 11 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 127
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical
protein F39G3.3 protein.
Length = 520
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 457 NPAVRSASSPSKQTQLSKINQLSIYRVNKLLIFYNQQLLHK 579
+PA R SP ++T+ S NQLS Y + + + Q+ LH+
Sbjct: 65 SPARRQEISPIRKTRRSPANQLSNYEIAQQKVRELQEELHQ 105
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 41 TSKTHTLRPETPGPQPPSPCNVRP 112
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 330 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 446
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 128 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 36
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 351 QPSGSGSHHQRYQSVGSLRASRGVRPCC--VWRDNIFILFTIEDINPNQVNFSVAVLSGF 178
+P G H QS+GSL+ +R PC DN+ I D+ + NF+ GF
Sbjct: 748 RPMGFKIVHPSLQSMGSLKTAR--HPCSQPARCDNLCIPANTPDLTTSSDNFTCMCAQGF 805
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,414
Number of Sequences: 27780
Number of extensions: 379810
Number of successful extensions: 1285
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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