Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30383
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 113 9e-26
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 110 1e-24
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 105 4e-23
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 3.1
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 4.1
At1g09800.1 68414.m01100 tRNA pseudouridine synthase family prot... 29 4.1
At3g51290.1 68416.m05614 proline-rich family protein 28 5.5
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 28 7.2
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 7.2
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 27 9.6
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 27 9.6
At3g06450.1 68416.m00746 anion exchange family protein similar t... 27 9.6
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac... 27 9.6
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 27 9.6
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 113 bits (273), Expect = 9e-26
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = +1
Query: 46 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 225
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 226 IFNGKKYEDIVP 261
IF KK EDIVP
Sbjct: 64 IFTSKKLEDIVP 75
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGK 434
PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L Q+++ FD GK
Sbjct: 75 PSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGK 134
Query: 435 ELLCTVLKSCGEECVIAVK 491
+L+ +V+ + GEE + A+K
Sbjct: 135 DLVVSVMSAMGEEQINALK 153
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 110 bits (264), Expect = 1e-24
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = +1
Query: 46 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 225
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 226 IFNGKKYEDIVP 261
IF KK EDIVP
Sbjct: 64 IFTSKKLEDIVP 75
Score = 93.1 bits (221), Expect = 2e-19
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGK 434
PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L TQL+ F+ GK
Sbjct: 75 PSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGK 134
Query: 435 ELLCTVLKSCGEECVIAVK 491
+++ +V+ + GEE + A+K
Sbjct: 135 DIVVSVMSAMGEEQMCALK 153
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 105 bits (251), Expect = 4e-23
Identities = 44/72 (61%), Positives = 54/72 (75%)
Frame = +1
Query: 46 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 225
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 226 IFNGKKYEDIVP 261
IF KK EDIVP
Sbjct: 64 IFTAKKLEDIVP 75
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/79 (51%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGK 434
PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L Q+R FD GK
Sbjct: 75 PSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGK 134
Query: 435 ELLCTVLKSCGEECVIAVK 491
+++ +V+ S GEE + AVK
Sbjct: 135 DIVVSVMSSMGEEQICAVK 153
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 375 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 476
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 146 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 39
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At1g09800.1 68414.m01100 tRNA pseudouridine synthase family protein
contains Pfam profile PF01416: tRNA pseudouridine
synthase
Length = 372
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 142 GRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDIVPPH 267
G+P KI S + G H + V V ++ + +K +++PPH
Sbjct: 93 GQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPH 134
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 23 KTQQWVTSKTHTLRPETPGPQPPSP 97
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 649 TAEPSPSLTSLAIPHPLTSPTRSVVS 726
TA P+PS+T P P +PT + VS
Sbjct: 42 TAAPTPSITPTPTPTPSATPTAAPVS 67
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 503 SCVCFDGDDALLTAGFQHGA 444
+C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 288 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 437
V+R+ +++ Y L ADN + + G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +3
Query: 318 ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 452
+SD+ L + A G D+ +++ D DL Q++ + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191
>At3g06450.1 68416.m00746 anion exchange family protein similar to
putative Anion exchanger family members: GB:AAD39673,
GB:AAD55295 [Arabidopsis thaliana]
Length = 732
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 639 PPLYYYSFFKLNLYTILC 586
PP Y+Y F L TILC
Sbjct: 331 PPAYHYDLFLLGFLTILC 348
>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
RAP2.7 (RAP2.7) nearly identical to AP2 domain
transcription factor RAP2.7 (GI:2281639) [Arabidopsis
thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 47 KTHTLRPETPGPQPP 91
+T +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 455 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 279
+HGA + AA++V L +RD E + V+V S + + + D++ ++V G
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232
Query: 278 VHVVCGG 258
+ CGG
Sbjct: 233 RELSCGG 239
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,596
Number of Sequences: 28952
Number of extensions: 351617
Number of successful extensions: 1202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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