Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30382
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 162 5e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 161 9e-41
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 77 2e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.023
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 2.0
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 8.2
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 8.2
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 162 bits (393), Expect = 5e-41
Identities = 76/118 (64%), Positives = 88/118 (74%)
Frame = +3
Query: 255 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 434
C FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNL
Sbjct: 200 CTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNL 259
Query: 435 VPYPRIHFPLVTYAPVISAEKAYHDSFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 608
VPYPRIHFPLVTYAP++SA KA+H+S P + P A ++A C
Sbjct: 260 VPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATC 316
Score = 127 bits (306), Expect = 2e-30
Identities = 53/67 (79%), Positives = 59/67 (88%)
Frame = +2
Query: 515 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 694
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDW
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 695 CPTGFKV 715
CPTGFK+
Sbjct: 347 CPTGFKI 353
Score = 115 bits (276), Expect = 8e-27
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPA 180
VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPA
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
Query: 181 PQVSTAVVEPYNSILTTHTTLEHSD 255
PQVST+VVEPYNS+LTTH TL+ +D
Sbjct: 175 PQVSTSVVEPYNSVLTTHATLDLAD 199
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 161 bits (391), Expect = 9e-41
Identities = 72/86 (83%), Positives = 79/86 (91%)
Frame = +3
Query: 255 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 434
C FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNL
Sbjct: 204 CTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNL 263
Query: 435 VPYPRIHFPLVTYAPVISAEKAYHDS 512
VPYPRIHFPLVTY+P++SA KA+H+S
Sbjct: 264 VPYPRIHFPLVTYSPIVSAAKAFHES 289
Score = 124 bits (300), Expect = 1e-29
Identities = 51/67 (76%), Positives = 60/67 (89%)
Frame = +2
Query: 515 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 694
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDW
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
Query: 695 CPTGFKV 715
CPTGFK+
Sbjct: 351 CPTGFKI 357
Score = 120 bits (290), Expect = 2e-28
Identities = 52/85 (61%), Positives = 69/85 (81%)
Frame = +1
Query: 1 VDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPA 180
+D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPA
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 181 PQVSTAVVEPYNSILTTHTTLEHSD 255
PQVST+VVEPYNS+LTTH TL++SD
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDNSD 203
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +3
Query: 261 FMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVP 440
F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP
Sbjct: 200 FCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVP 259
Query: 441 YPRIHFPLVTYAPV 482
+PR+HF +V +AP+
Sbjct: 260 FPRLHFFMVGFAPL 273
Score = 66.1 bits (154), Expect = 5e-12
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +1
Query: 4 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 183
D VLD +R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP
Sbjct: 114 DAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAP 173
Query: 184 QVSTAVVEPYNSILTTHTTLEHSD 255
+ S VVEPYN+ L+ H +E+SD
Sbjct: 174 KSSDTVVEPYNATLSMHQLVENSD 197
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +2
Query: 512 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 691
+SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 692 WCP 700
W P
Sbjct: 344 WIP 346
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +3
Query: 264 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 443
++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P
Sbjct: 204 VLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPS 263
Query: 444 PRIHFPLVTYAP 479
PR HF L +Y P
Sbjct: 264 PRCHFLLTSYTP 275
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ- 186
++D I + AD L+GF + H L+ERL+ Y KK ++++P Q
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 187 VSTAVVEPYNSIL 225
VS VV+PYNS+L
Sbjct: 178 VSDVVVQPYNSLL 190
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 515 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 691
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 692 WCPTGFKV 715
W P +V
Sbjct: 351 WGPASIQV 358
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 440 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 279
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 527 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 652
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 655 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 512
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 396 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVISAEKAYHDSFPSPRSQTHASSPPTRW*N 569
A +V++ E +TN +P HFP T AP S EK S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426
Query: 570 ATPV 581
TP+
Sbjct: 427 GTPI 430
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = -2
Query: 320 ALNVEITAADVIDGFIVDHESTSECSRVVWVVRI 219
+LN+ ++ G D+E+ + + +WV I
Sbjct: 218 SLNINFMGVGIVSGLTADYETQEQITASIWVEHI 251
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 435 VPYPRIHFPLVTYAPVISAEKAYHDSFPSPRSQTHASSPPTR 560
VP P P V+ P S + ++ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVS-TPRSSVPSPHSNASPSPTSSSMASAAPAR 1279
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 632 WVRRHHGTAYSKPCTCHDGG 573
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 468 TYAPVISAEKAYHDSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM 638
T PV S+ S P +P + T+ ++ + +TPV ++ CT TS P
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYT 564
Query: 639 *TRPSLPSKPSVLSNSSTGVQPVS 710
T P S ++ S++ PV+
Sbjct: 565 ST-PVTSSNYTISSSTPVTSTPVT 587
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 434 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 261
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -3
Query: 592 VLAMTGVAFHHLVGGLEACVCDLGDGKLSW*AFSAEMTGAYVTSGKWIRG*GTKLVW 422
++++ +AF +L+ +E V D D SW F+ + ++ + G T W
Sbjct: 788 LVSILSIAFSYLISRVELIVADGADPVASWKIFAMMVPKSFWKQNHLLFGLQTAQFW 844
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,919
Number of Sequences: 5004
Number of extensions: 65859
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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