Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30381
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 1.6
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 1.6
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 2.8
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 2.8
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 3.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 3.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 4.9
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 24 6.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 6.5
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 24 8.6
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 24 8.6
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 24 8.6
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +1
Query: 160 HYCDCWC----KPGLIRDSIAHKCVKECPK 237
HY CWC KP +++ + H C C K
Sbjct: 256 HYL-CWCGKQEKPEFVKNLVPHSCGDPCGK 284
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 1.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 157 KHYCD---CWCKPGLIRDSIAHKCVKECPKYDEILDSYIIPISLL 282
KH+ D C +PG+ + +C ++CP I DS++ P +L+
Sbjct: 3 KHHPDLVLCRRQPGITVGKLCERCDEKCP----ICDSHVRPTTLV 43
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 83 GGHSAELIPRHEIMNNKTNQRFILP 9
GG L+ HE MN K + R++ P
Sbjct: 128 GGRVVRLLGNHEFMNAKGDWRYVHP 152
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 2.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 337 IKHLFKISHRKLHHLYARTVMRSELCNYPEFHRISGILS 221
+ HL S +K + + M+ L YPE+ R+SG +S
Sbjct: 291 VSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVS 329
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 61 INSAECPPDQYDPGPN 108
I+SAEC ++ PGPN
Sbjct: 337 IDSAECDAEEPSPGPN 352
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 3.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 38 YSLFRVSELTLRNVHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVTAGASLAS 193
+S VS + + + + + +PS + TQT ++T T G+S+AS
Sbjct: 175 FSYTNVSSSVIATAYTSASSTILSSPSVEQSTPSIITQTESSTTTEGSSVAS 226
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 202 SIAHKCVKECPKYDEILDSYIIPISLLFGRIDD 300
S A K +K+ KYD +LD Y P S G + +
Sbjct: 1109 SYAKKALKKPYKYDPVLDKY--PPSRYLGSVSE 1139
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 91 YDPGPNCAFETICALRSAHSNRKH 162
Y GP+ F T C ++ H+ ++H
Sbjct: 46 YFYGPSIDFPTTCKIKQVHTLQRH 69
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 262 IIPISLLFGRIDDVIFYVK 318
I + L+FG+ D++++YVK
Sbjct: 1715 ISSLMLIFGKQDNILYYVK 1733
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 85 DQYDPGPNCAFETICALRSAHSNRKH 162
+ Y GP +F CA++ H ++H
Sbjct: 44 EPYFNGPTTSFPESCAIKQVHLLQRH 69
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 196 RDSIAHKCVKECPKYD--EILDSYIIPIS 276
RDS+ + CV C KY E LD +++ IS
Sbjct: 43 RDSLGNDCVHVCTKYGSLECLD-WLLDIS 70
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 137 RNAQIVSKAQFGPGSYWSGGHSAELIPRHEIMNN 36
RN+ + ++ G+ + HS E P HE+ +N
Sbjct: 96 RNSSLYARFPLSAGA-GASSHSEETTPSHEVTSN 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,010
Number of Sequences: 5004
Number of extensions: 28917
Number of successful extensions: 67
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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