Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30381
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481...    31   0.28 
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           29   1.1  
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558...    27   4.6  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    27   6.1  

>10_02_0060 -
           4808506-4808535,4808564-4809588,4810125-4810292,
           4811202-4811652
          Length = 557

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 106 NCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECP---KYDEILDSYIIPIS 276
           NC+F ++C       NR    DC CK G+  D     C +  P   K    L S+I+ I 
Sbjct: 163 NCSFNSVCV------NRPGGFDCPCKRGMTGDGKRGTCTENFPPAAKAAVGLSSFIVFIV 216

Query: 277 LLF 285
           L+F
Sbjct: 217 LIF 219


>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 127 CALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECPKYDEILDSYIIPISLL 282
           C+      NR    DC CKPG+  D  A  C ++ P   +++   +  + +L
Sbjct: 347 CSSDGICKNRPGGYDCPCKPGMKGDGKAGTCTEKFPLVAKVIVGVVAGLLVL 398


>04_04_1636 +
           34951841-34954322,34954440-34954627,34955737-34955838,
           34956101-34956177,34956258-34956319,34956504-34956511
          Length = 972

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 232 PKYDEILDSYIIPISLLFGRIDDVIFYVK 318
           P  DE+L   IIP++++  R DD I + K
Sbjct: 510 PNKDEVLGRVIIPLTMIDRRADDRIVHGK 538


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 190 LIRDSIAHK--CVKECPKYDEILDSYIIPISLLFGRIDDVIF-YVKS 321
           L  DS  H   C+K+   YDEI     +   LL  +++++IF Y KS
Sbjct: 608 LYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKLNEIIFTYYKS 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,915
Number of Sequences: 37544
Number of extensions: 182317
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)