Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30381
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.16 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.28 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.66 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   8.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.1  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 166 CDCWCKPGLIRDSIAHKC---VKECPKYDEILDSY 261
           C   C+PG+I+      C     +C +Y+ + D Y
Sbjct: 539 CSLPCEPGMIKKQQGDTCCWVCDQCEEYEYVYDEY 573


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 166 CDCWCKPGLIRDSIAHKC---VKECPKYDEILDSY 261
           C   C+PG+I+      C     +C +Y+ + D Y
Sbjct: 449 CSLPCEPGMIKKQQGDTCCWVCDQCEEYEYVHDEY 483


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 172 CWCKPGLIRDSIAHKCVKECP 234
           C CKPG   D    +C  ECP
Sbjct: 247 CHCKPGYQADVEKQECT-ECP 266


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 115 RRNLDPDRIGPVDIPQS 65
           RRN  P   GP D P+S
Sbjct: 55  RRNPGPGSKGPRDFPRS 71


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 295 LYARTVMRSELCNYPEFHRISGILS 221
           L +  V  S  C YP ++   G+L+
Sbjct: 624 LNSTNVTLSTKCPYPSYYSYIGVLT 648


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 174 LVQAWPHKGLYRSQMCER 227
           +V+   H GLY  Q C R
Sbjct: 6   VVRGIEHGGLYYHQRCSR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,889
Number of Sequences: 438
Number of extensions: 2109
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)