Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30381
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37090.1 68415.m04551 glycosyl transferase family 43 protein ...    29   1.3  
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar...    26   6.8  
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar...    26   6.8  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    26   6.8  

>At2g37090.1 68415.m04551 glycosyl transferase family 43 protein low
           similarity to galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 2, Rattus norvegicus
           [SP|Q9Z137]; contains Pfam domain Glycosyltransferase
           family 43 [PF03360]
          Length = 351

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 120 LEGAIWTRIVLVRWTFRRVNSETRNNE*QNKPKIHLASF 4
           +EG +     ++ W  R++N+ET     + KP IH++SF
Sbjct: 251 VEGPVCESSQVLGWHLRKINNET-----ETKPPIHISSF 284


>At5g59400.2 68418.m07444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 301

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 103 PNCAFETICALRSAHSNRK-HYCDC 174
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


>At5g59400.1 68418.m07443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 299

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 103 PNCAFETICALRSAHSNRK-HYCDC 174
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 101 PGSYWSGGHSAELIPRHEIMNNKTNQ 24
           P SYW G  SA L+P  E ++    Q
Sbjct: 720 PYSYWPGRESANLMPGSENVSENAQQ 745


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,663
Number of Sequences: 28952
Number of extensions: 149480
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)