Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30380
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 89 8e-19
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 87 2e-18
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 84 2e-17
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.9
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 88.6 bits (210), Expect = 8e-19
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG FK
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK 203
Query: 688 YASN 699
A+N
Sbjct: 204 QAAN 207
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +3
Query: 261 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
EYR ER++I LAR+AR GNY+VP E KL FV+RIRGIN + PK+ K L
Sbjct: 61 EYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113
Score = 55.6 bits (128), Expect = 6e-09
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ RK++QL RL QINNG+FV+ NKA ML++ EPY+ + P
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIP 146
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 127 PESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAE 249
PES+LK K + R + + +++S+ KK+ I KRAE
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAE 56
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/64 (59%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG FK
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK 204
Query: 688 YASN 699
A+N
Sbjct: 205 QAAN 208
Score = 68.9 bits (161), Expect = 7e-13
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = +3
Query: 261 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
EYR ER++I L R+AR GNYYVP E KL FVIRIRGIN + PK+ K L
Sbjct: 62 EYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ RK++QL RL QINNGVFV+ NKAT ML++ EPY+ + P
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIP 147
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +1
Query: 106 SKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAE 249
SK+ PES+LK +K E R +R+ +++++ KK+ I KRAE
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAE 57
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 83.8 bits (198), Expect = 2e-17
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG FK
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFK 202
Score = 58.8 bits (136), Expect = 7e-10
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = +3
Query: 249 TVVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
T + YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK K L
Sbjct: 56 TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
++RKVL+L RL +INN VFVR NKA MLRI EPY+ + P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 690 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 511
+L +F+ +D M L T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 510 S 508
S
Sbjct: 377 S 377
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 103 DSKKLPAVPESVLKHRKXXEALRTRR 180
+S++LP V E++ ++RK E R+R+
Sbjct: 849 ESEELPQVHETINQYRKSCETQRSRK 874
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,809
Number of Sequences: 5004
Number of extensions: 54941
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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