Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30380
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   100   2e-21
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    94   1e-19
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    79   3e-15
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    28   8.3  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 42/64 (65%), Positives = 54/64 (84%)
 Frame = +1

Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
           GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG  FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFK 199

Query: 688 YASN 699
            A+N
Sbjct: 200 EANN 203



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+  P
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = +3

Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 56  QEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 112 KLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ 252
           K   VPESVLK RK  E     R +  L  +  A++ ++ IF RA+Q
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQ 53


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 6/70 (8%)
 Frame = +1

Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFT 669
           GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+       L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198

Query: 670 VGEKFKYASN 699
           VG  FK A+N
Sbjct: 199 VGPHFKEANN 208



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +2

Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+  P
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +3

Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
           +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 55  EEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 124 VPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ 252
           VPESVL+ RK  E       +  +  +  +I+ ++ IF RA+Q
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQ 52


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/64 (51%), Positives = 49/64 (76%)
 Frame = +1

Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
           G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L ++ IIC+EDL+HEI +VG  F+
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFR 201

Query: 688 YASN 699
            ASN
Sbjct: 202 EASN 205



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 395 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
           +R++L+  RL Q+  GVF++   AT+  L + EP+I +  P
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFP 144


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 169 RTRRLQVTLKRRSSAIKKKREIFKR 243
           R R  Q+TL+ +   +KK+RE +KR
Sbjct: 225 RERYAQMTLQEKEEKLKKRREAYKR 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,463
Number of Sequences: 37544
Number of extensions: 346119
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)