Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30380
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 106 2e-23
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 31 0.68
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 30 2.1
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5) 29 3.6
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61) 29 4.8
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 29 4.8
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 28 6.4
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 28 6.4
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 28 6.4
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 6.4
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 28 6.4
SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021) 28 6.4
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 106 bits (254), Expect = 2e-23
Identities = 49/64 (76%), Positives = 54/64 (84%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSVREL+YKRG+ K+ QR+ +T NSIVEK L KH IICVEDLIHEIFTVGE FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFK 199
Query: 688 YASN 699
ASN
Sbjct: 200 EASN 203
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 255 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
VKEYR KE DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPK K L
Sbjct: 55 VKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+ P
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYP 142
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1
Query: 100 EDSKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ 252
+D K+P VPE++LK RK E ++ R + L ++ K++EIFKRAE+
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEK 53
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 97 KEDSKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASR 276
K+ S+++ + E + + RK +L+ T+ RR +KKKRE+ SRN
Sbjct: 920 KDSSERIRLLQEKIKEMRKLYGSLKAE--VATIDRRRKRLKKKREVTDSFRSYSRNEIFF 977
Query: 277 NVMKSD 294
V +SD
Sbjct: 978 WVTQSD 983
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 298 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 435
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 743
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 686 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 510
L++S KI + + +T CLW L ++ GI+ PL +A PR+ ++ L LG
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423
Query: 509 PKQ 501
P+Q
Sbjct: 424 PEQ 426
>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 608 STMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPKQCKARRYVA 477
+T+++ + +R SLANP LYT +T F+L K+ + R +A
Sbjct: 279 TTVIILTLFLRFLSSLANPLLYTFFKTDFQLALKKRNERIRRIA 322
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 696 TRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 556
T +E+F +DE + V E +LN DWY+LS + GE
Sbjct: 53 TIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99
>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
Length = 649
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 88 VKGKEDSKKLPAVPESVLKHRKXXEALRTRRLQVTL-----KRRSSAIKKKREIFKRAE 249
VKGK SKK + + +L + E LR RL + L K+ + +++ RE +RAE
Sbjct: 279 VKGKRMSKKDQRIIDLMLSRHEEAEQLRKERLMLDLEWDEQKQLENDLRQAREKQRRAE 337
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 543
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 841 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREVI 879
>SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)
Length = 219
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 543
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 64 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREVI 102
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 543
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 1011 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREVI 1049
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGYP---NLKSVRELV 543
+WC T E Y TY RA+ C Y K+ RE++
Sbjct: 281 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREVI 319
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGY 513
+WC T E Y TY RA+ C Y
Sbjct: 370 EWCKATMEASYTMNITYHRAIKCSPY 395
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGY 513
+WC T E Y TY RA+ C Y
Sbjct: 289 EWCKATMEASYTMNITYHRAIKCSPY 314
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGY 513
+WC T E Y TY RA+ C Y
Sbjct: 289 EWCKATMEASYTMNITYHRAIKCSPY 314
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 249 TVVKEYRI--KERDEIRLARQARNRGNYYVP 335
++ ++YR K RD +AR+ R+RG YY+P
Sbjct: 473 SISEKYRSSGKIRDTSSIARETRSRGPYYLP 503
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGY 513
+WC T E Y TY RA+ C Y
Sbjct: 470 EWCKATMEASYTMNITYHRAIKCSPY 495
>SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)
Length = 205
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 436 QWCVCTSE*GYCEYATYRRALHCLGY 513
+WC T E Y TY RA+ C Y
Sbjct: 64 EWCKATMEASYTMNITYHRAIKCSPY 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,187,212
Number of Sequences: 59808
Number of extensions: 416422
Number of successful extensions: 1003
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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