Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30380
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    29   0.056
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 616 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWGIPSN 500
           A++   CW  + Y+V  AW I    ++    L WG  +N
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNN 103


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 598 CWK*LVYVVHSAWRIHVCILTHGHSLSW---GIPSNVR 494
           CW  + Y++  AW +   +++    L W   G P N R
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTR 146


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 598 CWK*LVYVVHSAWRIHVCILTHGHSLSW---GIPSNVR 494
           CW  + Y++  AW +   +++    L W   G P N R
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTR 199


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 189 YAKEAFFCHQEEEGNLQEG*TVVKEYRIKERDEIR 293
           YA + FF    ++  L+    +  EYR+ E D ++
Sbjct: 82  YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 LGDYRLR*RGVLLPSRRRGKSS 238
           + DY++  + +LLP R  GKS+
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSN 149


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 363 RIRGINQVSPKSVKFCNCLDC 425
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 599 LLEVIGIRCPLSLAN 555
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 359 HPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 499
           H   W Q  F  ++ +  +      N G+  RL   T  + RI + Y
Sbjct: 2   HHRMWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGY 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,587
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)