Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30380
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 99 2e-21
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 99 2e-21
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 98 6e-21
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 98 6e-21
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 98 6e-21
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 97 1e-20
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 74 1e-13
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 30 1.7
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ... 29 3.9
At1g15740.1 68414.m01888 leucine-rich repeat family protein 29 3.9
At2g27480.1 68415.m03321 calcium-binding EF hand family protein ... 28 6.9
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.1
At3g23800.1 68416.m02991 selenium-binding family protein contain... 27 9.1
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG FK
Sbjct: 142 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFK 201
Query: 688 YASN 699
A+N
Sbjct: 202 EANN 205
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 58 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ + P
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 144
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 124 VPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASRN 279
VPESVLK K E + + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 64
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG FK
Sbjct: 137 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFK 196
Query: 688 YASN 699
A+N
Sbjct: 197 EANN 200
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ + P
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 139
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 124 VPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASRN 279
VPESVLK K E + + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 59
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 688 YASN 699
A+N
Sbjct: 199 EANN 202
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 103 DSKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SR 261
+++ VPESVLK RK E + Q + +K++ IF RA+Q S+
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSK 55
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 688 YASN 699
A+N
Sbjct: 199 EANN 202
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 103 DSKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SR 261
+++ VPESVLK RK E + Q + +K++ IF RA+Q S+
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSK 55
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 688 YASN 699
A+N
Sbjct: 199 EANN 202
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 103 DSKKLPAVPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SR 261
+++ VPESVLK RK E + Q + +K++ IF RA+Q S+
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSK 55
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/64 (68%), Positives = 52/64 (81%)
Frame = +1
Query: 508 GYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC EDLIHEI TVG FK
Sbjct: 137 GFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFK 196
Query: 688 YASN 699
A+N
Sbjct: 197 EANN 200
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 KEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWDTP 517
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ + P
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFP 139
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 124 VPESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASR 276
VPESVLK RK E + Q + + ++ IFKRAEQ S+ A +
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK 58
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 73.7 bits (173), Expect = 1e-13
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 12/209 (5%)
Frame = +1
Query: 97 KEDSKKLPAVPESVLKHRKXXEALR-TRRLQVTL------KRRSSAIKKKREIFK--RAE 249
+E++K L +PE VLK RK + L R+ Q+ L K++ S IK+ + RA+
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 250 Q*SRNTASRNVMK---SD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV* 420
+ + V + S P K +V GK + H ++ +++ +S +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 421 TAPNKQWCVCTSE*GYCEYATYRRALHCLGYPNLKSVRELVYKRGFAKLSGQRIPITSNS 600
+ + + Y TY GYPN KSV++L+YK+G + G +P+T N+
Sbjct: 123 ATDSLFQKLLKVQ----PYVTY-------GYPNDKSVKDLIYKKGCTIIEGNPVPLTDNN 171
Query: 601 IVEKRLHKHNIICVEDLIHEIFTVGEKFK 687
I+E+ L +H I+ +EDL++EI VG+ F+
Sbjct: 172 IIEQALGEHKILGIEDLVNEIARVGDHFR 200
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 255 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 56 VHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 486 SPSLTLLGIPQLKECP*VSIQTW-IRQAEWTTY 581
SPS ++ QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 109
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 130 ESVLKHRKXXEALRTRRLQVTLKRRSSAIKKKREIFKRAEQ 252
+ ++K + L+ +R++ +R S K+K+ +FK+AE+
Sbjct: 10 KQIVKENMGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEE 50
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 357 VIRIRGINQVSPKSVKFCNCLDCAK*TMVCLYV*IRLL*ICYVSPSLTLLGIPQLK 524
++ +R + ++ ++K+CNC+ A + + +R L IC +T +GI LK
Sbjct: 229 LVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQIC--CSKITDIGISYLK 282
>At2g27480.1 68415.m03321 calcium-binding EF hand family protein
similar to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 186
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 459 IRLL*ICYVSPSLTLLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQ 599
IRLL Y P +LL + + CP ++ W A+W N + +
Sbjct: 47 IRLLLFIYKIPVDSLLRLGKFTYCPKEYVELWNCLAQWRAIFNRYDR 93
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 347 IGICHPNPWYQPSFTEVRKVL 409
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At3g23800.1 68416.m02991 selenium-binding family protein contains
Pfam profile: PF05694 56kDa selenium binding protein
(SBP56)
Length = 480
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 526 SLSWGIPSNVRLG-DT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETWLIP 371
S SWG P+ G D + L KH VY +L+ D G+T L+P
Sbjct: 208 STSWGAPAAFTKGFDLKDVSDGLYG--KHLHVYSWPQGELKQILDLGDTGLLP 258
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 424 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 329
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,792
Number of Sequences: 28952
Number of extensions: 284860
Number of successful extensions: 779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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