Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30379
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    29   0.35 
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   2.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 195 GCCARKLPPGVNKSEAQSVLNSARIRPGKTQPIKP 299
           GC     PPG+N +E+   +   R RPG++    P
Sbjct: 22  GCIVEGCPPGMNLTESDVQVQLTRRRPGQSNLTTP 56


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 230 INTRRKFSSATSMFSVPSEFKIA-DLLKKQSTNFL 129
           INT  +F+SA+++FS+  ++ +  D    Q T +L
Sbjct: 115 INTYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 259 LFSTLWASDLLTPGGSFLAQHPCSVYHLSSRL 164
           +FS++W   ++   G F      S YH++ RL
Sbjct: 486 IFSSMWNPTIVLLLGGFTIAAALSKYHIAKRL 517


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 164 ADLLKKQSTNFLKA-LSSEYCPVFAAFITSVLTPDSLT 54
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,419
Number of Sequences: 5004
Number of extensions: 32647
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)