Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30379
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           27   5.7  
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495           27   5.7  
11_03_0169 + 11102198-11102272,11103716-11103767,11104071-111041...    27   7.5  
10_02_0062 - 4814139-4814176,4814571-4815627                           27   7.5  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 88  NAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGT 186
           NAAK   Y E K   K ++C F K     S GT
Sbjct: 78  NAAKEVMYDESKGCNKKIVCEFGKVTKKPSKGT 110


>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
          Length = 344

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 325 FVVALEDLEGFIGCVLPGLILALFSTLWASDLL 227
           F+  ++ L G IG V PG +L L S   ASD L
Sbjct: 90  FLSPVDALHGDIGSVFPGDLLVLLSKSGASDEL 122


>11_03_0169 +
           11102198-11102272,11103716-11103767,11104071-11104185,
           11104258-11104328,11105077-11105164,11105251-11105369,
           11106276-11106278,11106327-11106397
          Length = 197

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = -1

Query: 368 LISRLIKI-KYVSWSLCS-SIGXXXXXXXXXXXXXYPCTV*YALGFRFINTRRKFSSATS 195
           L+   +K+ KY+SW+ CS ++G                 V  A      +      +A S
Sbjct: 84  LVEEKLKLSKYLSWTFCSCTVGKRKPSPDFYLHAVDHLNVDPASCIFIDDRMTNIEAALS 143

Query: 194 MFSVPSEFKIADLLKKQSTNFLKALSSEYCPV 99
           +  V  +FK A++LKK     L +L  E+ PV
Sbjct: 144 VGMVGLQFKNAEVLKKD----LCSLGVEFAPV 171


>10_02_0062 - 4814139-4814176,4814571-4815627
          Length = 364

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 195 GCCARKLPPGVN 230
           GCC + LPPGVN
Sbjct: 219 GCCQQTLPPGVN 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,461,741
Number of Sequences: 37544
Number of extensions: 191507
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)