Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30379
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 27   5.9  
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                27   5.9  
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             27   7.7  

>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 266 PCTV*YALGFRFINTRRKFSSATSMFSVPS 177
           PCT    +G  + N  +KF +ATS  S P+
Sbjct: 29  PCTTPLIIGIEYENVLQKFQNATSSSSSPT 58


>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 70  VSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALENFLLVLIN 234
           V  + +   K  + +  KA+ KF   F N +     +G L +++ +E+   VL+N
Sbjct: 229 VRKKPVPVLKDARANNHKAYIKFDKLFINDALYTGPEGYLILEITIEDSPFVLVN 283


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 298 GFIGCVLPGLILALFSTLWASDLLTPGGSFLAQ 200
           GF  C++P   LAL ST+ A   ++PG   + +
Sbjct: 262 GFFICIIPYSTLALASTVIAEVFMSPGSVLMLE 294


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 4   HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 126
           H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 195 GCCARKLPPGVNKSEAQSVLNSARIRPGKTQPIKPSRSSNATTKGPRHIFYFN*SRNKK 371
           GCC  K   G   +E     NSA   P K++  + ++ ++  +KG +    +   R KK
Sbjct: 2   GCCMSKPKNGDEDNEPSLRHNSAPTNPQKSKKKEKAKEADEGSKGKKKNKRWGLKRKKK 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,500,642
Number of Sequences: 59808
Number of extensions: 230082
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)