Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30378
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 76 4e-15
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 30 0.32
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.55
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.73
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 27 1.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.2
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 3.9
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 26 5.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 6.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.8
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 25 6.8
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 25 6.8
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 9.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.0
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 9.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.0
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 76.2 bits (179), Expect = 4e-15
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +2
Query: 77 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDI 241
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANL 68
Score = 30.3 bits (65), Expect = 0.24
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 584 WGKLASEILVQNWDG 628
WGK ASEIL +WDG
Sbjct: 182 WGKFASEILTVDWDG 196
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 29.9 bits (64), Expect = 0.32
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = -3
Query: 615 CTKISLANLPQRPTN----NSCQLATSPVDKSK----DMMLTPQIST-FIAIFGQTIHAI 463
C K+ ++ LP P+N N +L ++P + P I T F IFGQ I AI
Sbjct: 305 CKKLGISTLP--PSNYLSPNRAELESTPEQLLEVPWQHHQCHPLIKTHFFGIFGQKIDAI 362
Query: 462 DHFNFKLILLVCRKMVYKSFRIPHGFNCFHYINSLHESQ 346
D ++ KL + + +SF P F S+ +Q
Sbjct: 363 DFYSAKLYKISQQIENARSFDYPTTGQAFITFESMATAQ 401
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.1 bits (62), Expect = 0.55
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 379 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRY 495
T+ T+ D ++ HL+ +F + ++M++ ++YRY
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRY 218
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 92 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 211
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 612 TKISLANLPQRPTNNSC 562
T+I ++NLP PT N+C
Sbjct: 290 TRIQISNLPSSPTKNNC 306
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 367 DVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 486
DV+K + T+ PK +I L ++ +EF I+ ID ++ +K
Sbjct: 3765 DVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -3
Query: 501 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYINSLHESQYW 340
TF+ +G I+ D +N L +VY ++ + F+ + + S+++SQ W
Sbjct: 83 TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -3
Query: 489 IFGQTIHAIDHFNFKLILLVCRKMVYKSFRIP--HGFNCFHYINSLHESQYWLYCILKFL 316
I G + +F +IL R K IP +GFN + N ES WL+ F
Sbjct: 191 IVGWAFAVLSNFRTHIILRDLRPAGSKKRVIPTGYGFNLVSFPNYFFESLGWLF----FA 246
Query: 315 QFRKNYTSPLYNFFRS 268
K++ S ++ F S
Sbjct: 247 LLTKSWASWIFLFVGS 262
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 327 LKFLQFRKNYTSPLYNFFRSVFFRKSILLMSVT*SIMLVLLKISNFACR 181
LKF FRK T L NF + R + +V IM ++ +S+ R
Sbjct: 171 LKFRNFRKRLTGLLSNFVSQLSIRNYLYNSTVFEDIMSWVVAMSSSTMR 219
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 579 PTNNSCQLATSPVDKSKDMMLTPQISTFIAIFGQTIHAIDHFNFKLILLVCR-KMVYKSF 403
PT + A + + T +T AI G+ H+I++ F L L M+ K F
Sbjct: 501 PTEELSEQAARNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSLFLMMLKWF 560
Query: 402 RIPH 391
R+ H
Sbjct: 561 RLSH 564
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 244 KNALPEEDTPEEIIQRRGVVLSELQELQDAVEPV 345
K++LPE D + Q++ +LS++ ++ VEP+
Sbjct: 46 KSSLPESDWKGYLWQQQDYLLSKIGDIVCKVEPI 79
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 552 TSPVDKSKDMMLTPQISTFIAIFGQTIHAIDHFN 451
TS +K ++MLT QIST + ++I + F+
Sbjct: 325 TSSFEKCAELMLTNQISTRSLLISKSIKKLTSFS 358
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 373 MKTIETMRDPKTLINHLSTNKEYEFKIEMID 465
MKTIE P L + +K Y +E ID
Sbjct: 64 MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 337 EPVLRLMQRVDVMKTIETMRDPKTLINHLSTNKEYEFKIE 456
+PV+R+ + I + + P+ L H S K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 441 ILLVCRKMVYKSFRIPHGFNCFHYINSLHESQYWLYCILKFLQFRK 304
+L C + S FN F ++++ W+ ++ +LQFRK
Sbjct: 390 VLFACLAFLNASASAAVVFNWFCNLSTISGFLAWICVLVAYLQFRK 435
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 280 FLQECLLQEEHSSDVSNIIYHVSFAQN 200
FL++ LLQ++ SS VSNIIY Q+
Sbjct: 643 FLRKLLLQKKKSS-VSNIIYIEEITQS 668
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,067
Number of Sequences: 5004
Number of extensions: 49367
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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