Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30378
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 65 5e-11
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 63 2e-10
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 53 2e-07
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 30 1.7
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 4.0
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 7.0
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 28 7.0
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077... 27 9.3
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +2
Query: 74 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 247
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY DI +
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHK 59
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/82 (25%), Positives = 51/82 (62%)
Frame = +1
Query: 262 EDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLINHLSTNKEY 441
++ P+++++RR V+S L+ L +A P++ +Q + ++ +R K H+ ++ +
Sbjct: 65 DEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQN---QQLVQELRPDKQYNLHMLQDR-F 120
Query: 442 EFKIEMIDSMYRLAKYRYECGN 507
+ E I+++Y+ AK++++CGN
Sbjct: 121 QIGPEQIETLYQFAKFQFDCGN 142
Score = 35.1 bits (77), Expect = 0.046
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 581 LWGKLASEILVQNWD 625
LWGKLA+EIL+QNWD
Sbjct: 167 LWGKLAAEILMQNWD 181
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 74 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 247
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHK 59
Score = 35.1 bits (77), Expect = 0.046
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 581 LWGKLASEILVQNWD 625
LWGKLA+EIL+QNWD
Sbjct: 143 LWGKLAAEILMQNWD 157
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +2
Query: 74 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVTDIR 244
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 245 RM 250
++
Sbjct: 62 KL 63
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/79 (24%), Positives = 42/79 (53%)
Frame = +1
Query: 271 PEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLINHLSTNKEYEFK 450
P+++++RR V++ L L P+ V +K D + I L ++ ++
Sbjct: 77 PDDMVERRHEVVTRLGALAAPAAPI------VSALKNHHLGPDKEHNIRML--HERFQIG 128
Query: 451 IEMIDSMYRLAKYRYECGN 507
+ I+++Y+ AK++++CGN
Sbjct: 129 PDQIEALYQYAKFQFDCGN 147
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 584 WGKLASEILVQNWD 625
WGKL++EIL NWD
Sbjct: 173 WGKLSAEILNNNWD 186
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 253 LPEEDTPEEIIQRRGVVLSELQELQDAVEPV 345
LP+EDT E ++RRGV L+E + +AV+ V
Sbjct: 393 LPKEDTYVEFLKRRGVPLTERECSTNAVDIV 423
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = -2
Query: 397 PSWFQL----FSLHQLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQEEHS 245
PS F+L FSL +L A VS ++L H E +P+++H + L+ C+ ++ +S
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKDGNS 419
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 370 VMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 492
V+ +ET P TL+ L+TNK+Y K SMYR +R
Sbjct: 127 VIDNLETSPVPDTLLWGLATNKKYTTK-----SMYRTLTFR 162
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 241 QKNALPEEDTP--EEIIQRRGVVLS--ELQELQDAVEPVLRLMQRVDVMKTIETMRDPKT 408
+K A PE+DT + ++ G VL+ E++ +++ +QRVDV + + D +
Sbjct: 220 KKKAHPEDDTTTDDHPVRNFGTVLNRGEIRGQHAENSHLVKTLQRVDVNRPLAVYTDENS 279
Query: 409 LINH 420
L +H
Sbjct: 280 LPSH 283
>02_05_0961 -
33103024-33103555,33107323-33107432,33107577-33107707,
33107779-33107870,33108210-33108337,33108658-33108723,
33108815-33108907,33108979-33109128,33109553-33109578,
33109674-33109826,33110140-33110228,33110335-33110418,
33110564-33110598,33110702-33110842,33111045-33111128,
33111208-33111215,33111590-33111746
Length = 692
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = -2
Query: 397 PSWFQLFSLHQLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQEEHSSDVSNIIYH 218
PS+ +L SL F + ILAL VP V K++ +S++ +L+ S + NI Y
Sbjct: 143 PSYRKLSSLRNQFPDIPILALTATAVPKVQKDV-ISSLCLRNPLILRA--SFNRPNIFYE 199
Query: 217 VSF 209
V +
Sbjct: 200 VRY 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,660
Number of Sequences: 37544
Number of extensions: 274168
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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