Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30378
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                      45   6e-05
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     36   0.021
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  33   0.25 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    29   4.1  
SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)            28   5.4  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 27/88 (30%), Positives = 44/88 (50%)
 Frame = +1

Query: 244 KNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLINHL 423
           K   P+E+ P  ++++R  V+ EL++LQ   EP+            I    DP+      
Sbjct: 14  KGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSDPEFTA--- 58

Query: 424 STNKEYEFKIEMIDSMYRLAKYRYECGN 507
                 + K EM+D +Y+ AK++YECGN
Sbjct: 59  ------QIKPEMLDVLYKFAKFQYECGN 80



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 581 LWGKLASEILVQNWD 625
           LWGKLASEIL+QNWD
Sbjct: 106 LWGKLASEILMQNWD 120


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 581 LWGKLASEILVQNWD 625
           LWGKLASEIL+QNWD
Sbjct: 43  LWGKLASEILMQNWD 57



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 457 MIDSMYRLAKYRYECGN 507
           M+D +Y+ AK++YECGN
Sbjct: 1   MLDVLYKFAKFQYECGN 17


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 334 VEPVLRLMQRVDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 492
           +E  ++L + + V +T  T    + L N L   KEY+  +E+    YRL K R
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER 760


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
 Frame = +1

Query: 286  QRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPK-TLINHLST-----NKEYEF 447
            +R   +L +++EL   V+ + + ++++ ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 448  KIEMIDSMYR 477
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
 Frame = +1

Query: 262 EDTPEEIIQRRG-----VVLSELQELQDAVEPVLRLM-QRVDVMKTIETMRDPKTLINHL 423
           ED  EE+++RRG     ++L +L EL        RL+ Q V V+ +   +   + L  + 
Sbjct: 497 EDKEEELLRRRGDLLVVMLLGDLAELDAWFTETRRLLDQPVIVVGSNSFLEAKQQLETYR 556

Query: 424 STNKEYEFKIEMIDSM 471
             +KE E+K + +D +
Sbjct: 557 RISKELEYKQQGLDKL 572


>SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)
          Length = 240

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 238 HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVD 369
           H+ +A PE+ T  ++     ++ +ELQ ++D   PV  ++  +D
Sbjct: 19  HEASAAPEDTTSPKLSSATILLNNELQNIEDEYVPVSNVLVWID 62


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +1

Query: 238  HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
            HQ N   EED PE  ++R     + LQ+ ++  EPV        + KT     +PK+  +
Sbjct: 878  HQDN---EEDEPENKVKRNKGKPARLQDHEEDEEPVAS-TSATGITKTPGKGPNPKSARS 933

Query: 418  HLSTNKEYEFKIEMIDSM 471
              S+ K+   K E  D +
Sbjct: 934  TRSSRKKKNEKEEEDDDL 951


>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 280 IIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLINHLSTNKEYEFKIE 456
           ++Q +   +S  ++  DA E V  L Q+V       T  + K +++H  TN+E E KIE
Sbjct: 128 LVQLKAQEVSRRKDNVDATEMVQSLRQQVQ-----STQNEVK-ILSHTITNREAELKIE 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,028,217
Number of Sequences: 59808
Number of extensions: 336366
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)