Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30378
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 58 7e-09
Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical p... 29 2.1
AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin ... 29 2.1
AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like ... 29 2.1
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 28 6.3
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 28 6.3
U50193-8|AAL11478.2| 394|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 74 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTD 238
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++L+KTNMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE 56
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +1
Query: 271 PEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPK---TLINHLSTNKEY 441
P I ++ ++ E EL+ V+ V+ +++ +V + ++ R+ ++ HL+ N +
Sbjct: 64 PAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHLTQN--H 121
Query: 442 EFKIEMIDSMYRLAKYRYECGN 507
F ++M+D++++ +K+ YECGN
Sbjct: 122 NFTVDMVDTLFKYSKFMYECGN 143
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 581 LWGKLASEILVQNWD 625
L+GKLASEIL+Q W+
Sbjct: 169 LYGKLASEILLQEWE 183
>Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 238 HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
H+K + +++ E I+ + +Q L+D + + Q +D K D K N
Sbjct: 711 HEKQVIADQNNQETILDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLKQTDAKQ-EN 769
Query: 418 HLSTNKE 438
H+ KE
Sbjct: 770 HIQVEKE 776
>Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 238 HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
H+K + +++ E I+ + +Q L+D + + Q +D K D K N
Sbjct: 711 HEKQVIADQNNQETILDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLKQTDAKQ-EN 769
Query: 418 HLSTNKE 438
H+ KE
Sbjct: 770 HIQVEKE 776
>AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin
BMK-1 protein.
Length = 958
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 238 HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
H+K + +++ E I+ + +Q L+D + + Q +D K D K N
Sbjct: 711 HEKQVIADQNNQETILDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLKQTDAKQ-EN 769
Query: 418 HLSTNKE 438
H+ KE
Sbjct: 770 HIQVEKE 776
>AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like
protein KLP-14 protein.
Length = 958
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 238 HQKNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
H+K + +++ E I+ + +Q L+D + + Q +D K D K N
Sbjct: 711 HEKQVIADQNNQETILDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLKQTDAKQ-EN 769
Query: 418 HLSTNKE 438
H+ KE
Sbjct: 770 HIQVEKE 776
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 27.9 bits (59), Expect = 6.3
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = -3
Query: 507 ISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYINSLHESQYWLYCI 328
I+TFI + + + + R VY +F N H+ ++ + L
Sbjct: 450 INTFITLLTYISSCTNPITYCFLNKKFRNAVYATFGRKK--NMRHHFQKVYFDIFELLIF 507
Query: 327 LKFLQFRKNYTSPLYNFFRSVFFRKSILLMSVT*SIML 214
K + ++K+ SP+ F +FF S L+SV S++L
Sbjct: 508 FK-INYQKSIKSPVSVFSNYLFFGFSAPLISVNLSLIL 544
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.3
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = -3
Query: 507 ISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYINSLHESQYWLYCI 328
I+TFI + + + + R VY +F N H+ ++ + L
Sbjct: 339 INTFITLLTYISSCTNPITYCFLNKKFRNAVYATFGRKK--NMRHHFQKVYFDIFELLIF 396
Query: 327 LKFLQFRKNYTSPLYNFFRSVFFRKSILLMSVT*SIML 214
K + ++K+ SP+ F +FF S L+SV S++L
Sbjct: 397 FK-INYQKSIKSPVSVFSNYLFFGFSAPLISVNLSLIL 433
>U50193-8|AAL11478.2| 394|Caenorhabditis elegans Hypothetical
protein ZK328.6 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 256 PEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLIN 417
P++D + + G + SELQ+L V R + V + +R PK+ IN
Sbjct: 139 PDDDVTQRFLAIEGTLFSELQQLTLQVHVNPRYYKNVGEIVKSFILRYPKSNIN 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,292
Number of Sequences: 27780
Number of extensions: 268587
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -