Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30378
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    66   2e-11
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   2.5  
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    28   4.4  
At1g67880.1 68414.m07751 glycosyl transferase family 17 protein ...    28   4.4  
At1g12990.1 68414.m01508 glycosyl transferase family 17 protein ...    27   7.8  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 27/60 (45%), Positives = 42/60 (70%)
 Frame = +2

Query: 68  SYSKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 247
           S   +DLT  I   LDRHLVFP+ EFL  ++ Y   ++L++K+++L++TNM+DY  DI +
Sbjct: 4   SKQNYDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAMDIHK 63



 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 24/88 (27%), Positives = 51/88 (57%)
 Frame = +1

Query: 244 KNALPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMKTIETMRDPKTLINHL 423
           K+    ED P+E+++RR  V++ L+ L++A  P++  +   +    ++ +R  K   N  
Sbjct: 63  KSLYHTEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPN---AVQELRADKQ-YNLQ 118

Query: 424 STNKEYEFKIEMIDSMYRLAKYRYECGN 507
              + Y+   + I+++Y+ AK+++ECGN
Sbjct: 119 MLKERYQIGPDQIEALYQYAKFQFECGN 146



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 554 AN*QELFVGLWGKLASEILVQNWD 625
           +N +     LWGKLASEIL+QNWD
Sbjct: 162 SNLERSLSALWGKLASEILMQNWD 185


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -3

Query: 420 MVYKSFRIPHGFNCFHYINSLHESQYWLYCILKFLQFRKNYTSPLYNFFRSVFFRKSILL 241
           +VY S  + HGF  +  I   ++   W+Y ++  + +       L   FRS     S+L 
Sbjct: 534 IVY-SLLVVHGFYVYLIIEPWYKKTTWMYLMVPVVLY---LCERLIRAFRSSVEAVSVLK 589

Query: 240 MSVT*S--IMLVLLKISNFACRSSDWSYVSFAA 148
           ++V     + L L + SNF  +S  + Y++ +A
Sbjct: 590 VAVLPGNVLSLHLSRPSNFRYKSGQYMYLNCSA 622


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = -3

Query: 336 YCILKFLQFRKNYTSPLYNFFRSVFFRKSILLMSVT*SIMLVLLKISNFACRSSDWSYVS 157
           YC L  +   K  T P +++  ++FF   + LM V  +I+++ + +S+   +S++  ++S
Sbjct: 217 YCDLIGIAKNKFQTIPYFSYPSTLFFFLEMALMKVM-TILVLFVSVSSTLAQSNNGGHIS 275


>At1g67880.1 68414.m07751 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +1

Query: 274 EEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMK---TIETMR--DPKTLINHLST-NK 435
           EE  QR  + L +L  +    +  L +M  VD +    TI  +R  D    I HL   N 
Sbjct: 192 EEAYQR--IALDQLLRIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPQILHLRLKNY 249

Query: 436 EYEFKIEMIDSMYRLAKYRYECGNLWSQHH 525
            Y F+  + D  +R + +RY+ G     H+
Sbjct: 250 LYSFEFPVDDKSWRASVHRYQTGKTRYAHY 279


>At1g12990.1 68414.m01508 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327]; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 392

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +1

Query: 274 EEIIQRRGVVLSELQELQDAVEPVLRLMQRVDVMK---TIETMR--DPKTLINHLST-NK 435
           EE  QR  V L +L  +    +  L LM  VD +    TI  +R  D    I HL   N 
Sbjct: 194 EEAYQR--VALDQLLRIAGITDDDLLLMSDVDEIPSRHTINLLRWCDEIPKILHLRLKNY 251

Query: 436 EYEFKIEMIDSMYRLAKYRYECGNLWSQHH 525
            Y F+  + +  +R + +RYE G     H+
Sbjct: 252 LYSFEFLVDNKSWRASIHRYETGKTRYAHY 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,709
Number of Sequences: 28952
Number of extensions: 241588
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)