Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30377
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +1

Query: 235 LRKHSKCRSSCPTSIRASC*ISRTIPRNTMSELRVLMSRQYMQINT 372
           + +  +C  +CP  +  S  I   +P+N + E     ++ Y  + T
Sbjct: 98  VHRPGRCCKTCPGDLYDSDIIQDIVPQNVLDEEEKSSTKHYAALLT 143


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 381 YYYCIDLHVLPRHQYAQFA 325
           YY+C    + P H Y  F+
Sbjct: 299 YYFCRAFIIFPTHFYCAFS 317


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 331 LRVLMSRQYMQINTIIVIFLIKITPL 408
           + ++ ++ Y++ +T I  FLIK+T L
Sbjct: 139 ISLVQNKDYVERDTDIRRFLIKVTIL 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,266
Number of Sequences: 336
Number of extensions: 3109
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)