Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30377
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    35   0.008
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    28   0.95 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   5.1  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = +2

Query: 512 EVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWIS 622
           +VV+R I +++P   + N+FD  +  +PDLYGP WI+
Sbjct: 62  DVVQRCIHTLIP---TVNFFD-VVDDRPDLYGPFWIT 94


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 438 ETQPQSNHNFWTIEYYQKYFD-VQTVKLWRGLYHQYCPRKSLETILMGRSK 587
           ET P  N     +E  + + D ++ +K W   Y +  P  + E + + RSK
Sbjct: 466 ETLPLQNDTINKVEKVKHFDDSIRVLKYWLSCYERILPNSADERVFLVRSK 516


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 217 NEIKQILEKFTVQYWLVKMLTSYIKFQVIAKV 122
           +E+K  LEK ++ + L K L ++I+  + A+V
Sbjct: 127 SEVKDKLEKLSIHHPLKKDLLAFIQLDIAAEV 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,882
Number of Sequences: 5004
Number of extensions: 50267
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)