Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30377
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 29   2.3  
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)                 29   2.3  
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_12753| Best HMM Match : M (HMM E-Value=0.0006)                      28   7.0  
SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 512 EVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           +V  R++ S++P    RN+    I+  PDLYGP W+
Sbjct: 102 QVGHRILGSMVPA-YKRNFLISHIRPNPDLYGPFWV 136



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 465 FWTIEYYQKYFDVQTVKL 518
           FWT EYYQ +FDV T ++
Sbjct: 86  FWTFEYYQAFFDVDTYQV 103


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 360 HVLPRHQYAQFAHCVPGNSPGNLTTRPYGRW 268
           +VL  +Q  Q A+ +P N P NL +RP   W
Sbjct: 131 NVLRYYQETQVANVLPWNLPSNLVSRPNDIW 161


>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
          Length = 1271

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 410  RNARSCSRSRDSTSVESQLLDNRVLSEIL*CADSEVVERVISSVLPQKVSRNYFDGKIKG 589
            RNA    +SR S SV  + L  ++    + CAD E+ +R       +K+ + Y D K   
Sbjct: 1109 RNASQHDKSRSSNSVVGRPLRTKLPQTAVPCADQEIRQR--DQAAKEKM-KQYADNKRHV 1165

Query: 590  KP 595
            KP
Sbjct: 1166 KP 1167


>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 410 RNARSCSRSRDSTSVESQLLDNRVLSEIL*CADSEVVERVISSVLPQKVSRNYFDGKIKG 589
           RNA    +SR S SV  + L  ++    + CAD E+  R       +K+ + Y D K   
Sbjct: 42  RNASQHDKSRSSNSVVDRALRTKLPQTAVPCADQEI--RQCDQAAKEKM-KQYADNKRYV 98

Query: 590 KP 595
           KP
Sbjct: 99  KP 100


>SB_9899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 408 DETPGAVPEAETQPQSNHNFWTIEYYQKYFD-VQTVKLWRGLYHQYC 545
           +ETP A P A +  Q  + F   E  +   + V++ K+W+ LY  YC
Sbjct: 8   EETPPAPPPAASSFQPGYAFKPPEPVKLAKNGVESWKIWKQLYQHYC 54


>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
          Length = 304

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 388 LIKITPLTKRPELFQKQRLNLSRITT 465
           L +IT +TK+PE F+K+++   +IT+
Sbjct: 88  LEEITHVTKKPEFFEKEKILQDQITS 113


>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 248 ECFRKIIL*EKRNQTNFRKVHCTILACQNVN 156
           EC+RKI+  ++R Q   RK++   L C+  N
Sbjct: 299 ECYRKILNKKRRLQRRLRKLNEKYLICKTEN 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,157
Number of Sequences: 59808
Number of extensions: 350994
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)