Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30377
         (622 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013014-1|AAH13014.1|  316|Homo sapiens Yip1 domain family, mem...    38   0.029
BC000056-1|AAH00056.1|  316|Homo sapiens YIPF2 protein protein.        38   0.029
BC064590-1|AAH64590.1|  306|Homo sapiens Yip1 domain family, mem...    33   0.62 
AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane hel...    30   7.6  
AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane hel...    30   7.6  

>BC013014-1|AAH13014.1|  316|Homo sapiens Yip1 domain family, member
           2 protein.
          Length = 316

 Score = 37.9 bits (84), Expect = 0.029
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 509 SEVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           S+V++R+  S+LP+    N+    ++ +PDLYGP WI
Sbjct: 92  SQVLDRIKGSLLPRP-GHNFVRHHLRNRPDLYGPFWI 127



 Score = 36.3 bits (80), Expect = 0.087
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 408 DETPGAVPEAETQPQSNHNFWTIEYYQKYFDVQTVKLWRGLYHQYCPR 551
           +E+  A    E Q Q    FWT  YYQ +FDV T ++   +     PR
Sbjct: 58  EESDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPR 105


>BC000056-1|AAH00056.1|  316|Homo sapiens YIPF2 protein protein.
          Length = 316

 Score = 37.9 bits (84), Expect = 0.029
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 509 SEVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           S+V++R+  S+LP+    N+    ++ +PDLYGP WI
Sbjct: 92  SQVLDRIKGSLLPRP-GHNFVRHHLRNRPDLYGPFWI 127



 Score = 36.3 bits (80), Expect = 0.087
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 408 DETPGAVPEAETQPQSNHNFWTIEYYQKYFDVQTVKLWRGLYHQYCPR 551
           +E+  A    E Q Q    FWT  YYQ +FDV T ++   +     PR
Sbjct: 58  EESDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPR 105


>BC064590-1|AAH64590.1|  306|Homo sapiens Yip1 domain family, member
           1 protein.
          Length = 306

 Score = 33.5 bits (73), Expect = 0.62
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 512 EVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           +V +R+  S+LP    +N+    I+  PDLYGP WI
Sbjct: 92  QVFDRIKGSLLPIP-GKNFVRLYIRSNPDLYGPFWI 126



 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 465 FWTIEYYQKYFDVQTVKLW 521
           FWT EYYQ +FDV T +++
Sbjct: 76  FWTFEYYQTFFDVDTYQVF 94


>AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 477 LLSRSCDSTEVESLLLEQLRAFRQRSNFD*KYY-YYCIDLHVL 352
           LL+ SC  T++  LLL  L +F Q S F   +  Y+CI + VL
Sbjct: 184 LLALSCTDTQINQLLLFALCSFIQTSTFVVIFISYFCILITVL 226


>AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 477 LLSRSCDSTEVESLLLEQLRAFRQRSNFD*KYY-YYCIDLHVL 352
           LL+ SC  T++  LLL  L +F Q S F   +  Y+CI + VL
Sbjct: 184 LLALSCTDTQINQLLLFALCSFIQTSTFVVIFISYFCILITVL 226


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,472,352
Number of Sequences: 237096
Number of extensions: 1606756
Number of successful extensions: 2841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)