Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30377
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05280.1 68416.m00576 integral membrane Yip1 family protein c...    37   0.009
At5g27490.1 68418.m03286 integral membrane Yip1 family protein c...    36   0.029
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    33   0.20 
At2g39805.1 68415.m04889 integral membrane Yip1 family protein c...    32   0.27 
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical...    28   5.7  
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical...    28   5.7  

>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +2

Query: 509 SEVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           S+VVER+  S+ P    R  F  K   KPDLYGP WI
Sbjct: 97  SDVVERLKESLFP---FRGTFTEKTADKPDLYGPFWI 130


>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 282

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 509 SEVVERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           S+VVER+  S+ P    R  F  K    PDLYGP WI
Sbjct: 98  SDVVERLKESLFP---FRGTFTEKTANNPDLYGPFWI 131


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 129 AITWNLMYDVNILTSQYCTVNFSKICLISFF 221
           ++ W  M+ VNIL++     NF K+CL +++
Sbjct: 261 SVKWEKMFSVNILSTNCLDANFWKLCLAAYY 291


>At2g39805.1 68415.m04889 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 275

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 506 DSEVV-ERVISSVLPQKVSRNYFDGKIKGKPDLYGPIWI 619
           D++VV  R++SS+ P   S ++F+ KI   PDLYG +WI
Sbjct: 91  DTDVVLNRLMSSLYP--TSGDFFN-KIDANPDLYGLVWI 126


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 174 GLSKC*RRTLNSKLLQKYKNRYCFRPRNETL 82
           GLS+  +RT N+KLL    NR C  P  E L
Sbjct: 63  GLSETEKRTNNTKLLLTLLNRNCESPFRECL 93


>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 313

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 254 AGHHVQRPYGRVVKFPGLFP 313
           A HH+  PYG  V +P ++P
Sbjct: 64  AQHHMMPPYGTPVPYPAMYP 83


>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 315

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 254 AGHHVQRPYGRVVKFPGLFP 313
           A HH+  PYG  V +P ++P
Sbjct: 64  AQHHMMPPYGTPVPYPAMYP 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,555,052
Number of Sequences: 28952
Number of extensions: 244030
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)