Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30375
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   1.8  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   9.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.7  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 70  KFYGLIASLLFSPILFVTYQMFYRFRGQVRPRFVIHQYLNFV 195
           KF    A+ +F   LFV Y  +  ++  +R +F  H Y   V
Sbjct: 385 KFTNSSATSIFVSFLFVYYMRYCTYKSLMRTQFAPHYYYALV 426


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 94  LLFSPILFVTYQMFYRFRGQVRPRFVIHQYLNFVLTAAIKP*KCF*SCRQFKIDY*IFLL 273
           L++ P+ F+     Y F G    RF+I+    F   +AI    CF + +  K  + I  L
Sbjct: 284 LIYVPLFFI---FVYSFLGHKEWRFIIYSIPWFNAASAIGASLCFNASKFGKKIFEILRL 340

Query: 274 MY 279
           M+
Sbjct: 341 MF 342


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 352  C*VFDILIIMYNYAFYNVNKTNCLHVHLFIS 444
            C VF++L  ++NYA Y     N LH+  +I+
Sbjct: 1924 CLVFEVLHAVHNYAIYG----NYLHLEEYIN 1950



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -1

Query: 617  YINIFNFQKKI*AKNTLHN*FTILEDTRSDRDLSRIKIY*TWWFXXXXYDNL*KCLYNEI 438
            Y+ +  F+ K+  ++  H    + E   +D  +SR     T W      D L   L + +
Sbjct: 2236 YLRMSTFRSKMLTQSITHYLKCLSESDENDVLISRCC---TMWLSNSHLDELNNSLQHYL 2292

Query: 437  NKCTCKQFV 411
                CK+F+
Sbjct: 2293 QNLPCKKFI 2301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,096
Number of Sequences: 5004
Number of extensions: 48216
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)