Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30372X
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 29 0.18
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 29 0.23
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 29 0.31
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.31
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.54
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 0.94
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 27 1.2
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 1.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 2.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 3.8
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 24 6.7
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 24 6.7
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 24 6.7
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 24 6.7
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 6.7
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 24 8.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 8.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 8.8
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 24 8.8
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 24 8.8
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 29.5 bits (63), Expect = 0.18
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 168 LQNLVFL---HEVLRGDLILASIFHHHVE 91
+Q LVF H+ +RG LIL SI H H+E
Sbjct: 41 VQGLVFKRPPHDAMRGKLILESIGHPHIE 69
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.23
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 4 RKNNLSQWEKAHQYL---FDANEAEAWMSEQELYMMVEDRGKDEISAQNLMK-KHEILEQ 171
+KN SQ E L +D A ++ L MVED + I+++N+ + + E LEQ
Sbjct: 491 KKNFFSQQEADEVELSNNYDLQGAAVQYLQRRL-RMVEDELHEAINSKNVQQSRSEELEQ 549
Query: 172 AVDDYAQTIRQLGETVRQL 228
+ +++ TVR+L
Sbjct: 550 QISKLTDNLQEYRNTVREL 568
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 28.7 bits (61), Expect = 0.31
Identities = 11/45 (24%), Positives = 29/45 (64%)
Frame = +1
Query: 76 MSEQELYMMVEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLG 210
MS ++L + ++ R + ++ + K+ I+ ++VD+ +T+++LG
Sbjct: 208 MSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSVDEMVKTLKELG 252
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.31
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 269 FHENXSLSGCSSAVSCLTVSPN*RIVCA*SSTACSKI 159
F E +L G +V+C++VSPN R + SS KI
Sbjct: 44 FSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKI 80
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 0.54
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = -3
Query: 254 SLSGCSSAVSCLTVSPN*RIVCA*SSTACSKISCFFMRFCAEISSLPRSSTIM*SSCSLI 75
SL+ S+A S LT S + S+T+ S S A SSL SST S S
Sbjct: 74 SLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 74 QASASFASN 48
S+S AS+
Sbjct: 134 ITSSSLASS 142
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 0.94
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 94 YMMVEDRGKDEISAQNLMKKHEILEQAVDD 183
+ +V D KD+ Q L+ H+ L+ VD+
Sbjct: 319 FKLVNDESKDDTLVQELLSFHKFLQVVVDE 348
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/50 (22%), Positives = 28/50 (56%)
Frame = +1
Query: 76 MSEQELYMMVEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLGETVRQ 225
+ + +L+ + G+DE QN+ + +++L+ +A I++L +R+
Sbjct: 13 LCQYKLWNDLPSYGEDENVPQNIRRCYQLLDMTSRSFAVVIKELPNGIRE 62
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 27 GESTPVPVRCERSGSLDERTGTLHD 101
GES V V CE G+LD + + D
Sbjct: 476 GESIGVDVECENDGTLDAKEAGIFD 500
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 2.9
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -3
Query: 251 LSGCSSAVSCLTVSPN*RIVCA*SSTACSKISCFFMRFCAEISS---LPRSSTIM*SSCS 81
LS + + S L +S + I+ SS S IS + S +P SST++ SS S
Sbjct: 625 LSSPTPSTSSLMISSS-SIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSS 683
Query: 80 LIQASASFASN 48
LI +S+ AS+
Sbjct: 684 LIVSSSPVASS 694
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 176 TACSKISCFFMRFCAEISSLPRSSTIM*SSCSLIQ 72
T+CS I+ +R C + L + I SSC L Q
Sbjct: 645 TSCSWITGLTLRLCFQNVLLEQQEDISKSSCELAQ 679
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 163 LEQAVDDYAQTIRQLGETVRQLTAEEHPLSDXFS*NNQK*TSCMRE*RTWLAK 321
L + ++ A +R E V++L A L + + + SC + +TW K
Sbjct: 173 LYERIELQAAELRSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKK 225
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 4 RKNNLSQWEKAHQYLFD---ANEAEAWMSEQELYMMVEDRGKDEI 129
R+ +L EK HQY D +A+ + + Y+ ED K E+
Sbjct: 475 RRKDLFAMEKIHQYFSDQGIKTSNQAYAALLDAYIEAEDTEKIEL 519
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 222 PNSLSQLTDSLRVIVDSLLQNLVFLHEVL 136
P +Q+ V+VDS +++L + E+L
Sbjct: 355 PGQYTQIASPREVVVDSAIRDLAYHDEIL 383
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 318 REPSPSFPHTTCL 280
+ PSPSFP TT L
Sbjct: 100 KHPSPSFPETTSL 112
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -2
Query: 246 WMFFGSELPNSLSQLTDSLRVIVDSLLQNLVFLHEVLRGDLILASIFHHHVE 91
++ S L S+S++ +++IV++ QN+ + + G+ L F HV+
Sbjct: 587 YIHLNSILNISISEVHSPIKIIVNTPTQNMQLPWQAVNGNNRLDHDFAFHVD 638
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +1
Query: 7 KNNLSQWEKAHQYLFDANEAEAWMSEQELYMMVEDRGKDEISAQNLMKKHEILEQAVDDY 186
++ L Q ++ ++ E E +QEL +E+R K E+ + + K E+ + + +
Sbjct: 171 QSRLKQKKQRSEFRASKREMERLERDQELRNKIEERNKKEL--ETIEKLRELAKARLQGF 228
Query: 187 A 189
+
Sbjct: 229 S 229
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 23.8 bits (49), Expect = 8.8
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 7 KNNLSQWEKAHQYLFDANEAEAWMSE--QELYMMVEDRGKDEISAQNLMKKHEILEQAVD 180
+ N + A FD ++ Q++ + ++ KD+ LMKK EQ++
Sbjct: 770 RENFDSLQNAIMETFDKQVTHCSVNHLVQQIRKLKDENKKDQSGTDKLMKKIYHCEQSLK 829
Query: 181 DYAQTIRQLGETVRQL 228
+ ++ L ++L
Sbjct: 830 EKTNSLETLVSEKKEL 845
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Frame = -2
Query: 345 KLHPAWLVFREPSPS-FP 295
KLHP W FR P S FP
Sbjct: 471 KLHPLWSRFRFPKDSEFP 488
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 282 DKLYAGMKDLARERRAKLD 338
D LYAG+++LAR+ K++
Sbjct: 389 DFLYAGLEELARKHPGKIN 407
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 13 NLSQWEKAHQYLFDANEAEAWMSEQEL 93
N S W LF+ ++ +W E+EL
Sbjct: 178 NNSAWNHRFYVLFETSKVVSWSLEEEL 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,961
Number of Sequences: 5004
Number of extensions: 27681
Number of successful extensions: 119
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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