Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30372X
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 29 1.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 1.5
10_01_0105 + 1287423-1289924 28 2.7
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 27 4.7
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 27 4.7
04_04_0904 + 29281572-29281753,29283702-29283786,29284190-292842... 27 4.7
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 27 4.7
08_01_0694 - 6136025-6136749,6137425-6137971 27 6.2
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049... 27 6.2
05_03_0198 + 9612767-9613243 27 6.2
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 27 6.2
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 27 6.2
01_06_0008 + 25531894-25532014,25532029-25532589,25533412-255335... 26 8.2
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 70 AWMSEQELYMMV--EDRGKDEISAQNLMKKHEILEQAVDDYAQTI 198
AW ++ + MV + R +D I N+M+ IL+ +DD +
Sbjct: 9 AWDGSRQFHKMVLLQKRSQDGIGRSNIMEAEGILKDLIDDKVNNV 53
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 67 EAWMSEQELYMMVEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLGETVRQLTAE 237
EA +EL M +ED K QN + K E +A D + R+ +T+R+ AE
Sbjct: 1689 EAGERNEELIMKIEDTDKKIEHLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLAE 1745
>10_01_0105 + 1287423-1289924
Length = 833
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 194 LSVNWERLLGSSLPKNIHSVTXFRETIRSRQVVCG 298
L+++W RL G +P+NI S+ SR +CG
Sbjct: 662 LNLSWNRLSGK-IPENIGSMKSIESLDLSRNYLCG 695
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 100 MVEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLG 210
+V+ GKD+ L + EILE AVD A+ + LG
Sbjct: 500 IVDASGKDKARHLELHRTLEILETAVDHMAEFVVLLG 536
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 46 LFDANEAEAWMSEQELYMMVEDRGKDEISAQNLMKKHEILE 168
+FD NEA + +E++ YM +++ + +I + L +H ILE
Sbjct: 477 IFDGNEAMSSKAEEKAYMSLQET-QCQILEKVLTDQHGILE 516
>04_04_0904 +
29281572-29281753,29283702-29283786,29284190-29284251,
29284337-29284436,29285140-29285181,29286542-29286583,
29286743-29286882,29286970-29287066
Length = 249
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 133 AQNLMKKHEILEQAVDDYAQTIRQLGETVRQL 228
+Q +K +I+ + VDD + RQLGE +QL
Sbjct: 137 SQARQRKTQIMMEQVDDLRRKERQLGELNKQL 168
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 157 EILEQAVDDYAQTIRQLGETVRQLTAEEHP 246
E+LE+A +D T+ + + +L EE P
Sbjct: 634 EVLEEATEDEINTVASIAQACLRLRGEERP 663
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 90 FLFAHPGF---RFVRIEQVLVCFLPLRQIVLAF 1
F + +PG R + +L CFLPL IVL F
Sbjct: 66 FSYLYPGAPVDRVFSVSYMLACFLPLVLIVLCF 98
>07_03_1698 +
28803971-28804534,28804614-28804696,28804780-28804900,
28804982-28805155,28805245-28805349,28805439-28805765
Length = 457
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 103 VEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLGETVRQLTAEEHP 246
V +G EI A +M+K +ILE+ +Y + R + LT +HP
Sbjct: 137 VRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDI------LTKVDHP 178
>05_03_0198 + 9612767-9613243
Length = 158
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 100 SCRVPVRSSRLPLRSHRTGTGV 35
SCR + S R+P RSH +G V
Sbjct: 85 SCRFIIHSCRVPHRSHHSGVEV 106
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 103 VEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQLGETVRQLTAEEHP 246
V +G EI A +M+K +ILE+ +Y + R + LT +HP
Sbjct: 294 VRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDI------LTKVDHP 335
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 61 EAEAWMSEQELYMMVEDRGKDEISAQNLMKKHEILE 168
E++ + +E E + DRG+ E+S +KK E +E
Sbjct: 808 ESDFYWAEIEAGTLQFDRGRSEVSLLRELKKEEFIE 843
>01_06_0008 +
25531894-25532014,25532029-25532589,25533412-25533501,
25533502-25533683
Length = 317
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 278 SRQVVCGNEGLGSRKTSQAG 337
+R + CG G+GSR+ +AG
Sbjct: 181 TRSIACGANGVGSRQAMRAG 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,264
Number of Sequences: 37544
Number of extensions: 187678
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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