Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30372X
(373 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 0.99
At5g59390.1 68418.m07442 XH/XS domain-containing protein contain... 28 1.7
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 28 2.3
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp... 27 4.0
At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ... 27 4.0
At1g75790.1 68414.m08803 multi-copper oxidase type I family prot... 27 4.0
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con... 27 5.3
At4g27260.1 68417.m03913 auxin-responsive GH3 family protein sim... 26 7.0
At3g44790.1 68416.m04823 meprin and TRAF homology domain-contain... 26 7.0
At3g14075.1 68416.m01778 lipase class 3 family protein low simil... 26 7.0
At2g46535.1 68415.m05804 expressed protein 26 7.0
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 26 9.2
At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative ... 26 9.2
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim... 26 9.2
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 26 9.2
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 26 9.2
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 29.1 bits (62), Expect = 0.99
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -2
Query: 282 LLLIVSRKXVTEWMFFGSELPNSLSQLTDSLRVIVDSLLQNLVFLHEVLRGDLILASI-- 109
L L + + +W SE+ +++ DS +V + + LH++ DL ++SI
Sbjct: 324 LRLCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPR 383
Query: 108 -FHHHVE 91
HHH +
Sbjct: 384 LDHHHTQ 390
>At5g59390.1 68418.m07442 XH/XS domain-containing protein contains
Pfam domain PF03469: XH domain and PF03468: XS domain
Length = 561
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = +1
Query: 25 WEKAHQYLFDANEAEAWMSEQELYMMVEDRGKDEISAQNLMKKHEILEQAVDDYAQTIRQ 204
WEK H+ L D N+ W++ ++ Y + GK+ ++L +I+E+ +
Sbjct: 121 WEKGHR-LRD-NKLYGWVAREDDYNRSDTVGKNVKKKRDLKSISQIVEEDERKMVHLVEN 178
Query: 205 LGETVRQ 225
+ +T+ +
Sbjct: 179 MSQTIEK 185
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 156 VFLHEVLRGDLILASIFHHHVEFLFAHPGFRFVRIE 49
V+ +GD++L HH F+ H FVR++
Sbjct: 355 VYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVD 390
>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
component-related / COG complex component-related
contains weak similarity to Conserved oligomeric Golgi
complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
Length = 836
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Frame = +2
Query: 251 VTXFRETIRSRQVVCG----NEGLGSRKTSQA 334
++ +ET++S +VVCG +G+GS+K + A
Sbjct: 490 ISMLQETLKSLRVVCGVDGTGDGVGSKKDASA 521
>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 862
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 118 CLDLPPSC---RVPVRSSRLPLRSHRTGTGVLS 29
C D P S R+ + ++LP++SHR G LS
Sbjct: 50 CSDAPSSVTQDRIIIVGNQLPIKSHRNSAGKLS 82
>At1g75790.1 68414.m08803 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 545
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 55 ANEAEAWMSEQELYMMVEDRGKDEIS 132
+ +AE W QELYM V+ G+++ S
Sbjct: 499 SQKAEQWYLGQELYMRVKGEGEEDPS 524
>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 520
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 99 DGGRSRQG*DLRAEPHEETRDFGASCRRLRAD 194
DGG G D E +TR+ G+S R++A+
Sbjct: 33 DGGEDDDGEDDDTESKSQTRESGSSVDRIKAE 64
>At4g27260.1 68417.m03913 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 612
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 222 PNSLSQLTDSLRVIVDSLLQNLVFLHEVLRGDLILASIFHHHVEFLFAH 76
PN +DS + + +L L EVLR + AS F ++FL H
Sbjct: 198 PNETILCSDSYQSMYSQMLCGLCQHQEVLRVGAVFASGFIRAIKFLEKH 246
>At3g44790.1 68416.m04823 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 324
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 10 NNLSQWEKAHQYLFDANEAEAWMSEQELYMMVEDRGKDEISAQNLMKKHEILE 168
++L Q EKA +YL D++ W+ E++L + E + +++I + + E L+
Sbjct: 224 DDLGQAEKALRYLKDSDFKVDWL-ERKLEEVKEKKMEEQIGKSRMQELEEELK 275
>At3g14075.1 68416.m01778 lipase class 3 family protein low
similarity to calmodulin-binding heat-shock protein
CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
region
Length = 642
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 127 ISAQNLMKKHEILEQAVDDYAQTI--RQLGETVRQLTAEEHP 246
++ ++L K + ++ + D+ + RQ+ +++LT E+HP
Sbjct: 601 LTPRSLYSKVRLSQRMISDHFMPVYRRQIERLIQELTVEQHP 642
>At2g46535.1 68415.m05804 expressed protein
Length = 175
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 118 CLDLPPSCRVPVRSSRLPLRSHRTG 44
CLDLPP +P +++PL + G
Sbjct: 68 CLDLPPRLLLPGEFTQMPLPERKHG 92
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 57 ERSGSLDERTGTLHDGGRSRQG*DLRA 137
+R L E G L D G SRQG +L+A
Sbjct: 176 QRDNLLFEMKGPLIDNGMSRQGAELKA 202
>At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative
(DFL-1) identical to auxin-responsive GH3 homologue
[Arabidopsis thaliana] GI:11041726; similar to
auxin-responsive GH3 product [Glycine max] GI:18591;
contains Pfam profile PF03321: GH3 auxin-responsive
promoter
Length = 612
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 222 PNSLSQLTDSLRVIVDSLLQNLVFLHEVLRGDLILASIFHHHVEFLFAH 76
PN +DS + + +L L EVLR + AS F ++FL H
Sbjct: 198 PNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIKFLEKH 246
>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 603
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 222 PNSLSQLTDSLRVIVDSLLQNLVFLHEVLRGDLILASIFHHHVEFL 85
PN +DS + + +L L+ HEVLR + AS + FL
Sbjct: 197 PNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFASGLLRAISFL 242
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 167 SKISCFFMRFCAEISSLPRSSTIM*SSCSLIQASASFASNRYW 39
S+ S F + + P+S+ SSC + S+S +S+R W
Sbjct: 118 SRFSNLFRARSEDFDTNPKSNNPRFSSCDASEISSSSSSSRSW 160
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 99 DGGRSRQG*DLRAEPHEETRDFGASCR 179
DGGR R G DL+ E+ F CR
Sbjct: 86 DGGRGRGGSDLKCYECGESGHFARECR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,446
Number of Sequences: 28952
Number of extensions: 149799
Number of successful extensions: 602
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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