Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30371
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 28 0.91
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 27 2.1
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.1
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 6.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.5
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 342 HSFL*VTPLSHHA*YSLVAGYCP-LPHHLFDFF 247
H ++ TP S HA + + GY LP+H+F FF
Sbjct: 187 HKWIVPTPYSSHA-FHYLDGYSQSLPYHMFPFF 218
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 342 HSFL*VTPLSHHA*YSLVAGYCPLPHHLFDFF 247
H ++ TP + HA S LP+HLF FF
Sbjct: 154 HKWIICTPYASHAFKSADGFLQSLPYHLFPFF 185
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 222 PFEICRNTERSQIGDVEEDNNLQLESIMHDEIE 320
P E + ++++ ++ E+ NLQLESI+ ++++
Sbjct: 157 PAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 99 FQLYIKLY--CNRRAQDGIPVTRYHKQ*IKCIKYSR 200
F+LYI Y CN ++ PV +YHK + KY R
Sbjct: 440 FELYIGGYEICNAYEEENDPVAQYHK--FQAQKYDR 473
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 276 PLPHHLFDFFRCFCRFQMDFFNIT 205
P+ H LF FF C C F F+++
Sbjct: 151 PILHFLFFFFLCVCVFLSFLFSLS 174
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/95 (24%), Positives = 35/95 (36%)
Frame = +3
Query: 240 NTERSQIGDVEEDNNLQLESIMHDEIEELLTKTNEENQEFXXXXXXXXXXXXXXXTIKSG 419
N +R D DNN +I+ D+ ++ + EE K G
Sbjct: 341 NKKRQDDVDQATDNNTN--TILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIVKKLG 398
Query: 420 RELFAIIKTTNENGEVTWDTLSNKERSYYSEPF*H 524
+++ NG VT DT+ N+ YY F H
Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGFRH 433
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/95 (24%), Positives = 35/95 (36%)
Frame = +3
Query: 240 NTERSQIGDVEEDNNLQLESIMHDEIEELLTKTNEENQEFXXXXXXXXXXXXXXXTIKSG 419
N +R D DNN +I+ D+ ++ + EE K G
Sbjct: 341 NKKRQDDVDQATDNNTN--TILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIVKKLG 398
Query: 420 RELFAIIKTTNENGEVTWDTLSNKERSYYSEPF*H 524
+++ NG VT DT+ N+ YY F H
Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGFRH 433
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 124 AIEGLKMVYRSPDITNNESSVSNILETSNIEEIHLKSAETPKE 252
+++ LK+ Y +PD+ N ETS+ E + + E E
Sbjct: 259 SVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDEENEDE 301
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 169 NNESSVSNILETSNIEEIHLKSAETPKE 252
N S VSN+L N E HL+ A K+
Sbjct: 578 NKSSEVSNLLSRYNTEVAHLEDALHSKD 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,551
Number of Sequences: 5004
Number of extensions: 44403
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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