BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30371 (601 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 28 0.91 SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 27 2.1 SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.1 SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 2.1 SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.8 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.8 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.8 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 6.4 SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.5 >SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 28.3 bits (60), Expect = 0.91 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 342 HSFL*VTPLSHHA*YSLVAGYCP-LPHHLFDFF 247 H ++ TP S HA + + GY LP+H+F FF Sbjct: 187 HKWIVPTPYSSHA-FHYLDGYSQSLPYHMFPFF 218 >SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 27.1 bits (57), Expect = 2.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 342 HSFL*VTPLSHHA*YSLVAGYCPLPHHLFDFF 247 H ++ TP + HA S LP+HLF FF Sbjct: 154 HKWIICTPYASHAFKSADGFLQSLPYHLFPFF 185 >SPAC23H4.07c |srp102||signal recognition particle receptor beta subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual Length = 227 Score = 27.1 bits (57), Expect = 2.1 Identities = 10/33 (30%), Positives = 23/33 (69%) Frame = +3 Query: 222 PFEICRNTERSQIGDVEEDNNLQLESIMHDEIE 320 P E + ++++ ++ E+ NLQLESI+ ++++ Sbjct: 157 PAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189 >SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 531 Score = 27.1 bits (57), Expect = 2.1 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +3 Query: 99 FQLYIKLY--CNRRAQDGIPVTRYHKQ*IKCIKYSR 200 F+LYI Y CN ++ PV +YHK + KY R Sbjct: 440 FELYIGGYEICNAYEEENDPVAQYHK--FQAQKYDR 473 >SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 25.8 bits (54), Expect = 4.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 276 PLPHHLFDFFRCFCRFQMDFFNIT 205 P+ H LF FF C C F F+++ Sbjct: 151 PILHFLFFFFLCVCVFLSFLFSLS 174 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 25.8 bits (54), Expect = 4.8 Identities = 23/95 (24%), Positives = 35/95 (36%) Frame = +3 Query: 240 NTERSQIGDVEEDNNLQLESIMHDEIEELLTKTNEENQEFXXXXXXXXXXXXXXXTIKSG 419 N +R D DNN +I+ D+ ++ + EE K G Sbjct: 341 NKKRQDDVDQATDNNTN--TILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIVKKLG 398 Query: 420 RELFAIIKTTNENGEVTWDTLSNKERSYYSEPF*H 524 +++ NG VT DT+ N+ YY F H Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGFRH 433 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.8 bits (54), Expect = 4.8 Identities = 23/95 (24%), Positives = 35/95 (36%) Frame = +3 Query: 240 NTERSQIGDVEEDNNLQLESIMHDEIEELLTKTNEENQEFXXXXXXXXXXXXXXXTIKSG 419 N +R D DNN +I+ D+ ++ + EE K G Sbjct: 341 NKKRQDDVDQATDNNTN--TILEDDEKDNDEEEEEEIVNAREKNLLNQQFNWTAIVKKLG 398 Query: 420 RELFAIIKTTNENGEVTWDTLSNKERSYYSEPF*H 524 +++ NG VT DT+ N+ YY F H Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGFRH 433 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 25.4 bits (53), Expect = 6.4 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +1 Query: 124 AIEGLKMVYRSPDITNNESSVSNILETSNIEEIHLKSAETPKE 252 +++ LK+ Y +PD+ N ETS+ E + + E E Sbjct: 259 SVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDEENEDE 301 >SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1092 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 169 NNESSVSNILETSNIEEIHLKSAETPKE 252 N S VSN+L N E HL+ A K+ Sbjct: 578 NKSSEVSNLLSRYNTEVAHLEDALHSKD 605 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,322,551 Number of Sequences: 5004 Number of extensions: 44403 Number of successful extensions: 124 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 124 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 262236260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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