Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30371
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.63 
U70854-12|AAB09150.1|  263|Caenorhabditis elegans Hypothetical p...    27   7.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 209 LLVSRIFDTLDSLFVISGDRYTILSPSIAVQLN 111
           L   ++   +DS FVI+GD++TIL P+   ++N
Sbjct: 302 LTEGKLMTHIDSCFVITGDQFTILRPNEHFKIN 334


>U70854-12|AAB09150.1|  263|Caenorhabditis elegans Hypothetical
           protein F38A5.6 protein.
          Length = 263

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 163 ITNNESSVSNILETSNIEEIHLKSAETPKEVK 258
           + +N  +++N+L   +    H+KS++T KEVK
Sbjct: 162 LNSNVENLNNLLHAIDDSRHHVKSSKTTKEVK 193


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 255  QIGDVEEDNNLQLESIMHDEIEELLTKTNEENQE 356
            Q+GDVEE++  QL+  M DE EE   +  ++N +
Sbjct: 3704 QMGDVEEEDEKQLDPKMWDE-EEKEEQDQQKNMD 3736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,233
Number of Sequences: 27780
Number of extensions: 247126
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)