Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30371
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 TIKSGRELFAIIKTTNENGEVTWDTLSNK 491
           T K    +  +IK   EN    WD+L+NK
Sbjct: 80  TDKQREVIKKVIKFLVENKPELWDSLANK 108


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 TIKSGRELFAIIKTTNENGEVTWDTLSNK 491
           T K    +  +IK   EN    WD+L+NK
Sbjct: 80  TDKQREVIKKVIKFLVENKPELWDSLANK 108


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 TIKSGRELFAIIKTTNENGEVTWDTLSNK 491
           T K    +  +IK   EN    WD+L+NK
Sbjct: 80  TDKQREVIKKVIKFLVENKPELWDSLANK 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 484 DKVSHVTSPFSFVVL 440
           DKVS    PFSF++L
Sbjct: 360 DKVSRFFFPFSFLIL 374


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 49  VWIWKWQRFL 78
           VWI KW++FL
Sbjct: 421 VWIPKWRQFL 430


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 573 DHVSWFDY 596
           +H+ WFDY
Sbjct: 559 NHIEWFDY 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,510
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)