Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30371
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    30   1.3  
At1g20070.1 68414.m02512 expressed protein                             30   1.3  
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    29   3.1  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    29   3.1  

>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 222 PFEICRNTERSQIGDVEEDNNLQLESIMHDEIEELLTKTNEE 347
           P +   N   +QI +++  N L   S+  +EIE   T+ NE+
Sbjct: 460 PLKSASNRAEAQIWNMDAQNALSYPSVQEEEIERTETRRNED 501


>At1g20070.1 68414.m02512 expressed protein
          Length = 193

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 136 LKMVYRSPDITNNESSVSNILETSNIEEIHLKSAE 240
           L+ V  S    NN SS++ + +T  I E H+K AE
Sbjct: 79  LQRVNSSRPRVNNNSSLNRVAQTKAISETHMKKAE 113


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 279 CPLPHHLFDFFRCFCRFQMDFF-NITC 202
           C LP HL DF++C    Q DFF ++ C
Sbjct: 338 CVLPIHLHDFYKC---MQCDFFLHVVC 361


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +1

Query: 121  TAIEGLKMVYRSPDITNNESSVSNILETSNIEEIHLKSAET 243
            T  E L+ ++RSP+IT +++++S++ +   I  +HL S  T
Sbjct: 1215 TVSELLESLFRSPEITRHKTAISSMKQLIGI--LHLASRST 1253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,594,825
Number of Sequences: 28952
Number of extensions: 214426
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)