Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30370
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813... 95 3e-20
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 56 3e-08
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 31 0.64
11_06_0446 - 23703088-23703681 30 1.9
01_07_0336 - 42833205-42834926 29 3.4
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 5.9
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 28 5.9
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887... 28 7.8
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 28 7.8
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 28 7.8
01_06_1151 + 34937738-34937855,34937959-34939244 28 7.8
>08_02_0069 -
11880841-11880936,11881150-11881221,11881263-11881343,
11881471-11881542,11882549-11882770,11882849-11882941,
11883509-11883601,11884546-11884632,11884958-11884990,
11885091-11885185,11886590-11886674,11886778-11886864,
11887757-11887846,11887929-11888057,11888668-11888757,
11888849-11888908,11889074-11889311,11889852-11890054
Length = 641
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/70 (60%), Positives = 52/70 (74%)
Frame = +2
Query: 299 VRILNEKVQTPTTTVYRXGPLIDLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQR 478
V I+NE + T TVYR GPL+DLCRGPH+ +T VKA K S++YW GKA+ +SLQR
Sbjct: 198 VEIINELPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSSYWRGKADRESLQR 257
Query: 479 VYGISFPEPK 508
VYGISFP+ K
Sbjct: 258 VYGISFPDSK 267
Score = 75.8 bits (178), Expect = 3e-14
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 KLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIE--EGFYYDMYYPEKGIS 176
+L+L ++D+ + + FWHSSAH+LGE++ER YG LC GP EGFYYD YY + ++
Sbjct: 122 ELKLFKFDSNEGRDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLN 181
Query: 177 STDFNVLEGLIKK 215
T F +++ +K
Sbjct: 182 ETHFGIIDAQAQK 194
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 290 PFKVRILNEKVQTPTTTVYRXGP-LIDLCRGPHVRHTGKV--KALKVTKNSATYWEGKAE 460
P+K+ IL E ++ T+Y G DLC GPHV TGK+ +A+++ + YW G
Sbjct: 205 PYKLEIL-EGIKEDPITIYHIGEEWWDLCAGPHVESTGKIDRRAVELESVAGAYWRGDES 263
Query: 461 AQSLQRVYGISF 496
Q LQR+YG ++
Sbjct: 264 NQMLQRIYGTAW 275
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 505 EKLKEWEVIQEEAAKRDHRKIGREQELFFFHE-LSPGSCFFQPRGAHIYNTL 657
++LK + +EEA +RDHR++G + +LF E G F+ P+GA I + L
Sbjct: 279 DQLKAYIHFKEEAKRRDHRRLGLDLDLFSIQEDAGGGLVFWHPKGAIIRHVL 330
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 63 AHMLGEAMERVYGGC-LCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPF 239
AH++ A+++++ + GP I+ GFYYD + + ++ D ++ + +I ++ P
Sbjct: 128 AHVMAMAVQKLFPNSKVTIGPWIDNGFYYD--FDMEPLTDKDLKRIKKEMDRIIRKNLPL 185
Query: 240 ERLELQRNSYWK 275
R E+ R K
Sbjct: 186 VREEVSREEAQK 197
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 409 SIKSYEELGNVLGGQSGSAELTARVRYIISRTEKLKEWE-VIQEEAAKRDHRKIGREQE 582
S+KS +E+G G + + RV+Y TEK E+E + E K++ ++ E +
Sbjct: 73 SVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKKKESGELSEESD 131
>11_06_0446 - 23703088-23703681
Length = 197
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 156 YPEKGISSTDFNVLEGLIKKIAKEKQPFERLELQRNSYWKCSITIRSKF 302
Y KGIS + L + KEKQ F + N ++KCS SKF
Sbjct: 67 YIVKGISPDAVRLRLFLFSLLGKEKQWFYANRVTINIWYKCSTAFLSKF 115
>01_07_0336 - 42833205-42834926
Length = 573
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 433 GNVLGGQSGSAELTARVRYIISRTEKLKE-WEVIQEEAAKRDH 558
G +G + GS A VR ++ R E ++E W++IQE A H
Sbjct: 198 GRQIGYKHGSVSYNAMVR-VLGREESMREFWDLIQEMKADGIH 239
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 5.9
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Frame = +2
Query: 365 DLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQS---LQRVYGISFPEPKS*KNGRSFK 535
D+ GP T + +AL G Q ++R +G+SFP P S +GR
Sbjct: 793 DVSSGPVCAPTSQKEALASNSGGFALTRGHVHPQPSLLVKREFGLSFPGPVSPTSGRQTT 852
Query: 536 RRPPSVTTERLEGNK--SYSSSTNCLPARVSSSHVELTFTT 652
+ + GNK S SS+ P V + F+T
Sbjct: 853 SLYSGSFSPK-AGNKQSSLPSSSPMSPTSGKKESVHVPFST 892
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 564 DWKGTRVILLPRTVSRLVFLPATWSSHL 647
D++ T +LP S LV PA WSSH+
Sbjct: 52 DYRPTPGSVLPVAASDLVLGPAQWSSHI 79
>11_03_0005 -
8871625-8872616,8872807-8872933,8873466-8874209,
8874287-8874328,8874898-8874993,8877589-8877662,
8877681-8878344
Length = 912
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 476 RVYGIS-FPEPKS*KNGRSFKRRPPSVTTER-LEGNKSYSSSTNCLPARVSSS 628
R +GIS +P K K RS K+ +++ +EG Y ST CL + VS S
Sbjct: 593 RQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPS 645
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 117 GPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELQRNSYWKCSITIRS 296
G P E+ + Y KG+SS + + K KQ F N++ +CS T S
Sbjct: 94 GMPNEDANAHLHTYTMKGVSSDTVRLRLFPFSLLGKAKQWFYANRATINTWDRCSTTFLS 153
Query: 297 KF 302
KF
Sbjct: 154 KF 155
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 510 LFGSGNDIPYTRCKLCASALPSQYVAEFFVTFNALTFPVCLT 385
L S + +P CK C + ++F T N T P+C T
Sbjct: 1859 LHTSNHSLPRLACKTCRHKFHGACLYKWFSTSNKSTCPLCQT 1900
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 527 SFKRRPPSVTTERLEGNKSYSSSTNCLPARVSSS 628
S++RR +T++ LE + S S+ P+ VSSS
Sbjct: 169 SYRRRASPLTSQELEASSSSMGSSGYQPSGVSSS 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,739
Number of Sequences: 37544
Number of extensions: 387367
Number of successful extensions: 1160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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