Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30370
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)         125   3e-29
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                29   2.6  
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)             29   4.5  
SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)                 28   7.9  
SB_9228| Best HMM Match : GoLoco (HMM E-Value=4.2)                     28   7.9  
SB_22131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score =  125 bits (302), Expect = 3e-29
 Identities = 53/74 (71%), Positives = 64/74 (86%)
 Frame = +3

Query: 39  QAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKI 218
           +AVFWHSSAH+LGEAMER YGGCLCYGPPIEEG+YYDM+   + +SS DF+ L+ L KKI
Sbjct: 290 RAVFWHSSAHVLGEAMERHYGGCLCYGPPIEEGYYYDMHLEGRQVSSNDFSSLDNLTKKI 349

Query: 219 AKEKQPFERLELQR 260
            KEKQPFERLE+++
Sbjct: 350 TKEKQPFERLEMKK 363



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/45 (68%), Positives = 37/45 (82%)
 Frame = +1

Query: 538 EAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIK 672
           E  K D  ++ ++QELFFFHELSPGSCFF P+GA IYNTL+NFIK
Sbjct: 360 EMKKEDLLEMFKDQELFFFHELSPGSCFFLPKGAVIYNTLINFIK 404


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 335 TTVYRXGPLIDLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGIS 493
           T   R G LI   +G H+    K++ L   K + T  EGK +   ++ VYG++
Sbjct: 750 TAAARRGSLIK--KGEHLETLAKLEVLAFDK-TGTLTEGKFQVTDMESVYGVN 799


>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
          Length = 396

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 470 LQRVYGISFPEPKS*KNGRSFKRRPPSVTTERLEGNKSYSSSTN 601
           L+   G S  +P S K   S K+ PP++  +R   + SY+S  N
Sbjct: 231 LKPTEGESSSQPSSAKTSPSKKQEPPALGNKRQSSSISYASPAN 274


>SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 443 WEGKAEAQSLQRVYGISFP 499
           W G+AEA +LQ+ Y IS P
Sbjct: 116 WPGRAEATALQKAYTISCP 134


>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
          Length = 566

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/122 (23%), Positives = 46/122 (37%)
 Frame = +2

Query: 182 RFQRTRRANKKNCKRKTAL*TFRTTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRXGPL 361
           R  RT +A++KN   K      +TTK Q  +  D  P + R      +T T+   R  P 
Sbjct: 140 RQARTSQASRKNKPSKNKPSKNKTTKPQDQDKQDARPRQARPREASRKTKTSKTKRSKPQ 199

Query: 362 IDLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGISFPEPKS*KNGRSFKRR 541
                    R T K K  +  + ++       E Q+ ++    +    K+ K  R  K  
Sbjct: 200 DKQAERQASRKTSKPKDKQAARQASRKTSKPQEKQAARQASSKTKTSRKT-KTSRKTKTS 258

Query: 542 PP 547
            P
Sbjct: 259 KP 260


>SB_9228| Best HMM Match : GoLoco (HMM E-Value=4.2)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 476 RVYGISFPEPKS*KNGRSFKRRPPSVTTERLEGNKSYSSSTNCLPARVSSSHVE 637
           + + +S P   S K  +S+K    +VTT+R + + S SSS++ + +   SS  +
Sbjct: 103 QAWDVSKPTGPSYKQSKSYKNST-TVTTKRSQASPSSSSSSSSVNSTAGSSRTK 155


>SB_22131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 626 WKK--HEPGDSSWKKNNSCS 573
           WKK  +E G++ WK+N  CS
Sbjct: 40  WKKEIYEQGEAQWKENKECS 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,184,448
Number of Sequences: 59808
Number of extensions: 430447
Number of successful extensions: 1355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)