Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30370
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...   153   1e-37
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...   153   1e-37
U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    28   5.3  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   5.3  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    28   5.3  
AC017117-12|AAF16614.2|   98|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score =  153 bits (371), Expect = 1e-37
 Identities = 71/111 (63%), Positives = 83/111 (74%)
 Frame = +2

Query: 185 FQRTRRANKKNCKRKTAL*TFRTTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRXGPLI 364
           F +  +  K   K K        TKE LLEMF YN FKVRI+ EK+ TP TTVYR GPLI
Sbjct: 157 FPKIDQIVKAAVKDKQKFERLEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLI 216

Query: 365 DLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGISFPEPKS*K 517
           DLCRGPHVRHTGKVKA+ +TKNS++YWEGKA+A+SLQR+YGISFP+ K  K
Sbjct: 217 DLCRGPHVRHTGKVKAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQLK 267



 Score =  117 bits (281), Expect = 9e-27
 Identities = 50/86 (58%), Positives = 67/86 (77%)
 Frame = +3

Query: 3   KLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISST 182
           KLELL++D+ +A+ VFWHSSAH+LGEAMER  GG LCYGPPI+EGFYYDM++  + I   
Sbjct: 96  KLELLKFDDDEAKQVFWHSSAHVLGEAMERYCGGHLCYGPPIQEGFYYDMWHENRTICPD 155

Query: 183 DFNVLEGLIKKIAKEKQPFERLELQR 260
           DF  ++ ++K   K+KQ FERLE+ +
Sbjct: 156 DFPKIDQIVKAAVKDKQKFERLEMTK 181



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 39/57 (68%), Positives = 52/57 (91%)
 Frame = +1

Query: 502 TEKLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIK 672
           +++LKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS F+ P+GAHIYN LV+FI+
Sbjct: 263 SKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSAFWYPKGAHIYNKLVDFIR 319


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score =  153 bits (371), Expect = 1e-37
 Identities = 71/111 (63%), Positives = 83/111 (74%)
 Frame = +2

Query: 185 FQRTRRANKKNCKRKTAL*TFRTTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRXGPLI 364
           F +  +  K   K K        TKE LLEMF YN FKVRI+ EK+ TP TTVYR GPLI
Sbjct: 198 FPKIDQIVKAAVKDKQKFERLEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLI 257

Query: 365 DLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGISFPEPKS*K 517
           DLCRGPHVRHTGKVKA+ +TKNS++YWEGKA+A+SLQR+YGISFP+ K  K
Sbjct: 258 DLCRGPHVRHTGKVKAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQLK 308



 Score =  117 bits (281), Expect = 9e-27
 Identities = 50/86 (58%), Positives = 67/86 (77%)
 Frame = +3

Query: 3   KLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISST 182
           KLELL++D+ +A+ VFWHSSAH+LGEAMER  GG LCYGPPI+EGFYYDM++  + I   
Sbjct: 137 KLELLKFDDDEAKQVFWHSSAHVLGEAMERYCGGHLCYGPPIQEGFYYDMWHENRTICPD 196

Query: 183 DFNVLEGLIKKIAKEKQPFERLELQR 260
           DF  ++ ++K   K+KQ FERLE+ +
Sbjct: 197 DFPKIDQIVKAAVKDKQKFERLEMTK 222



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 39/57 (68%), Positives = 52/57 (91%)
 Frame = +1

Query: 502 TEKLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIK 672
           +++LKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS F+ P+GAHIYN LV+FI+
Sbjct: 304 SKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSAFWYPKGAHIYNKLVDFIR 360


>U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical
           protein F10G2.3 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 542 PPSVTTERLEGNKSYSSSTNCLPARVSSS 628
           PPSVT   ++ N S+ +STN L   V +S
Sbjct: 293 PPSVTISPIQDNPSFCNSTNLLAPGVVTS 321


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582
           RTE+ KE E +++   K++ RK+ REQE
Sbjct: 80  RTEREKEEEELKKLKEKQEKRKLEREQE 107


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582
           RTE+ KE E +++   K++ RK+ REQE
Sbjct: 914 RTEREKEEEELKKLKEKQEKRKLEREQE 941


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582
           RTE+ KE E +++   K++ RK+ REQE
Sbjct: 80  RTEREKEEEELKKLKEKQEKRKLEREQE 107


>AC017117-12|AAF16614.2|   98|Caenorhabditis elegans Hypothetical
           protein F43C11.12 protein.
          Length = 98

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 518 NGRSFKRRPPSVTTERLEGNKSYSSSTNC 604
           NG +F + PPS T   L G K+   + NC
Sbjct: 69  NGITFNKDPPSYTNGSLNGYKTEIFTMNC 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,865
Number of Sequences: 27780
Number of extensions: 318688
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)