BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30370 (674 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 153 1e-37 Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 153 1e-37 U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical pr... 28 5.3 U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 28 5.3 U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 28 5.3 U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 28 5.3 AC017117-12|AAF16614.2| 98|Caenorhabditis elegans Hypothetical... 27 9.2 >Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical protein C47D12.6b protein. Length = 684 Score = 153 bits (371), Expect = 1e-37 Identities = 71/111 (63%), Positives = 83/111 (74%) Frame = +2 Query: 185 FQRTRRANKKNCKRKTAL*TFRTTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRXGPLI 364 F + + K K K TKE LLEMF YN FKVRI+ EK+ TP TTVYR GPLI Sbjct: 157 FPKIDQIVKAAVKDKQKFERLEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLI 216 Query: 365 DLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGISFPEPKS*K 517 DLCRGPHVRHTGKVKA+ +TKNS++YWEGKA+A+SLQR+YGISFP+ K K Sbjct: 217 DLCRGPHVRHTGKVKAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQLK 267 Score = 117 bits (281), Expect = 9e-27 Identities = 50/86 (58%), Positives = 67/86 (77%) Frame = +3 Query: 3 KLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISST 182 KLELL++D+ +A+ VFWHSSAH+LGEAMER GG LCYGPPI+EGFYYDM++ + I Sbjct: 96 KLELLKFDDDEAKQVFWHSSAHVLGEAMERYCGGHLCYGPPIQEGFYYDMWHENRTICPD 155 Query: 183 DFNVLEGLIKKIAKEKQPFERLELQR 260 DF ++ ++K K+KQ FERLE+ + Sbjct: 156 DFPKIDQIVKAAVKDKQKFERLEMTK 181 Score = 97.1 bits (231), Expect = 1e-20 Identities = 39/57 (68%), Positives = 52/57 (91%) Frame = +1 Query: 502 TEKLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIK 672 +++LKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS F+ P+GAHIYN LV+FI+ Sbjct: 263 SKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSAFWYPKGAHIYNKLVDFIR 319 >Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical protein C47D12.6a protein. Length = 725 Score = 153 bits (371), Expect = 1e-37 Identities = 71/111 (63%), Positives = 83/111 (74%) Frame = +2 Query: 185 FQRTRRANKKNCKRKTAL*TFRTTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRXGPLI 364 F + + K K K TKE LLEMF YN FKVRI+ EK+ TP TTVYR GPLI Sbjct: 198 FPKIDQIVKAAVKDKQKFERLEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLI 257 Query: 365 DLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAQSLQRVYGISFPEPKS*K 517 DLCRGPHVRHTGKVKA+ +TKNS++YWEGKA+A+SLQR+YGISFP+ K K Sbjct: 258 DLCRGPHVRHTGKVKAMAITKNSSSYWEGKADAESLQRLYGISFPDSKQLK 308 Score = 117 bits (281), Expect = 9e-27 Identities = 50/86 (58%), Positives = 67/86 (77%) Frame = +3 Query: 3 KLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISST 182 KLELL++D+ +A+ VFWHSSAH+LGEAMER GG LCYGPPI+EGFYYDM++ + I Sbjct: 137 KLELLKFDDDEAKQVFWHSSAHVLGEAMERYCGGHLCYGPPIQEGFYYDMWHENRTICPD 196 Query: 183 DFNVLEGLIKKIAKEKQPFERLELQR 260 DF ++ ++K K+KQ FERLE+ + Sbjct: 197 DFPKIDQIVKAAVKDKQKFERLEMTK 222 Score = 97.1 bits (231), Expect = 1e-20 Identities = 39/57 (68%), Positives = 52/57 (91%) Frame = +1 Query: 502 TEKLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIK 672 +++LKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS F+ P+GAHIYN LV+FI+ Sbjct: 304 SKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSAFWYPKGAHIYNKLVDFIR 360 >U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical protein F10G2.3 protein. Length = 417 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 542 PPSVTTERLEGNKSYSSSTNCLPARVSSS 628 PPSVT ++ N S+ +STN L V +S Sbjct: 293 PPSVTISPIQDNPSFCNSTNLLAPGVVTS 321 >U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein 3, isoform c protein. Length = 279 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582 RTE+ KE E +++ K++ RK+ REQE Sbjct: 80 RTEREKEEEELKKLKEKQEKRKLEREQE 107 >U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein 3, isoform b protein. Length = 1178 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582 RTE+ KE E +++ K++ RK+ REQE Sbjct: 914 RTEREKEEEELKKLKEKQEKRKLEREQE 941 >U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein 3, isoform a protein. Length = 350 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 499 RTEKLKEWEVIQEEAAKRDHRKIGREQE 582 RTE+ KE E +++ K++ RK+ REQE Sbjct: 80 RTEREKEEEELKKLKEKQEKRKLEREQE 107 >AC017117-12|AAF16614.2| 98|Caenorhabditis elegans Hypothetical protein F43C11.12 protein. Length = 98 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 518 NGRSFKRRPPSVTTERLEGNKSYSSSTNC 604 NG +F + PPS T L G K+ + NC Sbjct: 69 NGITFNKDPPSYTNGSLNGYKTEIFTMNC 97 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,594,865 Number of Sequences: 27780 Number of extensions: 318688 Number of successful extensions: 834 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 808 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 834 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1529108810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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