Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30369
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1028 + 22414928-22415154,22415374-22415558,22416001-22416056     30   0.58 
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    26   9.4  

>10_08_1028 + 22414928-22415154,22415374-22415558,22416001-22416056
          Length = 155

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 197 LHLFPCIISM-FIVAFLLLHFISTSSLAVCLDLNNSHYRRP 316
           +H+ P +  + F+V FLL H  ++SSLA+     N    RP
Sbjct: 44  IHIIPVLTLLCFLVLFLLSHDPASSSLAIATGRGNDGVHRP 84


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 134 LNYSLLGRYFYLSGGLSV*LKILQFV 57
           LNY LL  Y YLSG + V  +I  F+
Sbjct: 653 LNYQLLILYAYLSGNIRVHCRIRPFL 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,190
Number of Sequences: 37544
Number of extensions: 123227
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)