Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30369
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.58 
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   5.4  
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   5.4  
SB_5297| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.5  

>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 230 IVAFL-LLHFISTSSLAVCLDLNNSHYRRPLFISTTMLQF 346
           +VAF  ++ F ++++  VC  L N HYRR +  S   L F
Sbjct: 284 VVAFCNIMTFANSAANPVCYTLLNDHYRREIIYSLRKLTF 323


>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1400

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 258 IKCNSKNATMNILIMHGNKCNNQFATSIAIFY*IIGMTHISFK 130
           + C  K++T N   +   K        + + Y  +  +HISFK
Sbjct: 386 VYCKGKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISFK 428


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 258 IKCNSKNATMNILIMHGNKCNNQFATSIAIFY*IIGMTHISFK 130
           + C  K++T N   +   K        + + Y  +  +HISFK
Sbjct: 365 VYCKGKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISFK 407


>SB_5297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 ISMFIVAFLLLHFISTSSLAVCLDLNNS 301
           + + I  F +LH +STSSL V  D N S
Sbjct: 7   LPLCIYVFCILHCVSTSSLRVKADNNPS 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,441,228
Number of Sequences: 59808
Number of extensions: 157756
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)