Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30367X
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    60   2e-10
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    60   2e-10
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.27 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   0.83 
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.1  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   4.4  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   5.8  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   5.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 30/53 (56%), Positives = 38/53 (71%)
 Frame = -3

Query: 254 EVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 96
           EV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 44  EVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96



 Score = 31.1 bits (67), Expect = 0.089
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 346 KGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLR 203
           K +T + +  RP+R KG  +K + FVR +VR+++      R +   +R
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 30/53 (56%), Positives = 38/53 (71%)
 Frame = -3

Query: 254 EVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 96
           EV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 44  EVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96



 Score = 30.7 bits (66), Expect = 0.12
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 346 KGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLR 203
           K +T + +  RP+R KG  +K + FVR +VR+++      R +   +R
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 48  FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 224
           ++   M +   +GG +   SEHV K F L      V  ++   ++ S  +   LK + S 
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175

Query: 225 LL-ILSVSDNFRTKSRTNLECFV*RPFSLAGLI 320
           LL I ++ D  RT    N    V    S+ G +
Sbjct: 176 LLTITNIRDEHRTAPEFNQLSTVMSGISILGWV 208


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 69  MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 194
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 133 SVKNLATCSLR*GRQPPRLITITI 62
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 251  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 96
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +3

Query: 195 F*HLK*LHSPLLILSVSDNFRTKSRTNLECFV*RPFSLAGLILMALSVIPLRPADILVVL 374
           F H   +HSP   LSVS + ++ S T+   ++  P +       A  +    P + +  +
Sbjct: 87  FHHPHTIHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASKIQSHEPLNDMAAV 146

Query: 375 WPFRRPTAIS 404
            P  RP+ +S
Sbjct: 147 HPL-RPSHVS 155


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = -3

Query: 215 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 99
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 190 LSFDTLSNSIALFSY*ACPTTS 255
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 470 KKTSSPRAEFGTRSVRNHGSSF*NRSRPAKRPQN 369
           +++ SPR+++G+RS   H S   ++SR   R ++
Sbjct: 117 RRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRD 150


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 338 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 427
           D   A  + S F AFSQ Y  +  +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,065
Number of Sequences: 5004
Number of extensions: 30236
Number of successful extensions: 84
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)