Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30367X
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    79   1e-15
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     78   3e-15
07_03_0078 - 13147741-13148913                                         30   0.82 
09_01_0024 + 438288-438542,439020-439069,440096-440351                 29   2.5  
11_02_0038 - 7631462-7634428,7635975-7636250                           27   5.8  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/69 (57%), Positives = 48/69 (69%)
 Frame = -3

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG S + +        EVVG A YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE
Sbjct: 33  KGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 122 LSNVLAQMR 96
           ++ V+ +MR
Sbjct: 93  MAGVIRKMR 101



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 412 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKL 248
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+R++
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREV 50


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 40/69 (57%), Positives = 47/69 (68%)
 Frame = -3

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG S + +        EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE
Sbjct: 33  KGKSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 122 LSNVLAQMR 96
           ++ VL +MR
Sbjct: 93  MAGVLRKMR 101



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 412 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLS 245
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+R+++
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVA 51


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 309 AGLILMALSVIPLRPADILVVLWPF 383
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 239 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 114
           A++E R  E LK ++++ A K LKR+     + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 194 DKRALKFLKRRLGTHIRAKRKREELSNV 111
           DK+ LKFL  R  TH +     E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,364
Number of Sequences: 37544
Number of extensions: 207020
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)