Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30367X
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)              93   1e-19
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   1.5  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   3.4  
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   3.4  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   5.9  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   5.9  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 44/70 (62%), Positives = 55/70 (78%)
 Frame = -3

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG+SN+ ++       EVVG A YEKR MELL++ KDKRALKF K+RLGTH+R KRKREE
Sbjct: 24  KGASNKRVKFVRDVVREVVGFAPYEKRVMELLRIGKDKRALKFCKKRLGTHVRGKRKREE 83

Query: 122 LSNVLAQMRK 93
           +++VLA MRK
Sbjct: 84  ITSVLAAMRK 93



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -1

Query: 400 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRG 221
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VR++       + 
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 220 LWSYLRCQK 194
           +   LR  K
Sbjct: 51  VMELLRIGK 59


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 455 PRAEFGTRSVRNHGSSF*NRSRPAKRPQ 372
           PR  FG    RN+G  F   +RP K PQ
Sbjct: 659 PRVVFGLNGFRNNGGLFNALNRPIKNPQ 686


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -3

Query: 200 SKDKRALKFLKRRLGTHIRAKRKREELSN 114
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 313 PARLKGLQTKHSKFVRDLVRKLSDTLNMRRGLWSYLRCQK 194
           P RLK    +  K +    RKLS T  +++   +YL C+K
Sbjct: 764 PDRLKNNNQEEPKPIHRSPRKLSGTFGVKKSPLTYLFCEK 803


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 252 FRTKSRTNLECFV*RPFSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 404
           F  ++R +++ +    FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 197 FNLETRRSIDTYY--KFSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 245


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 252  FRTKSRTNLECFV*RPFSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 404
            F  ++R +++ +    FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 940  FNLETRRSIDTYY--KFSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 988


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 454  LVPNSAPGQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRP 311
            +VP  APG     +    +  GL+    TT +   RK  + +A+ + P
Sbjct: 1154 VVPVGAPGLKGQASLHASVRQGLKDERSTTPLGLSRKAASPRALSLSP 1201


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 287 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSH 418
           RLK++  SW N+     G  CD   A+G F   V FS  +   K R H
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRH 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,548
Number of Sequences: 59808
Number of extensions: 243766
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)