Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30367X
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    82   2e-16
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      29   1.3  
U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    27   5.1  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = -3

Query: 302 KGSSNETLQVCP*FSTEVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 123
           KG +++  ++      E+ G A YE+R +E+L++SKDKRALKFLKRR+GTH RAK KREE
Sbjct: 32  KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 91

Query: 122 LSNVLAQMRK 93
           L NV+   RK
Sbjct: 92  LQNVIIAQRK 101



 Score = 35.9 bits (79), Expect = 0.015
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = -1

Query: 400 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVRKLSDTLNMRRG 221
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVR+++      R 
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 220 LWSYLRCQK 194
           +   LR  K
Sbjct: 59  VLEMLRISK 67


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 437 TRSVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*F 261
           +RS RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     F
Sbjct: 411 SRSSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTF 470

Query: 260 S 258
           S
Sbjct: 471 S 471


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 437 TRSVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*F 261
           +RS RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     F
Sbjct: 411 SRSSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTF 470

Query: 260 S 258
           S
Sbjct: 471 S 471


>U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical
           protein R08C7.9 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 115 LLSSSRFLLARMCVPNRRFKNFRARLSFDTLSNSIALFSY*ACPTTSVLNHGQTWSVSF 291
           L S+S  L A+M  P R F   RA  S + +   I +       TT VLNH  ++   F
Sbjct: 280 LESASLRLDAQMAPPEREFVYIRANGSKEHIRGEIVVRRKDGTMTTIVLNHENSYFKMF 338


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEP 155


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEP 155


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 452 RAEFGTRSVRNHGSSF*NRSRPAKRP 375
           RA+ G  S R  GS   NR RP K P
Sbjct: 107 RAQHGADSKREGGSGSGNRGRPTKEP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,237
Number of Sequences: 27780
Number of extensions: 171093
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)