Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30366
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.6  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   2.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 581 SSINSPVAGTMTGA--SIICFLPFSVPTSM 498
           SS+  P  GTMTGA  + I  +  SV TS+
Sbjct: 280 SSLLEPAVGTMTGAGGTAIVSISTSVSTSV 309


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -2

Query: 426 YQRDVSLDFSHVSLPLYLSALSQSLHNII------ITPSLSNLFHFLHSFDCFSPQFAI 268
           +Q  VS DF  ++ P+Y        HN+       +TP L+ +   L SF   S +  I
Sbjct: 426 FQYYVSYDFYKMNHPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQRHQI 484


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 354 LHNIIITPSLSNLFHFLHSFDCFSPQFAIVFQGPFRLFSNSKDGS 220
           L+N++   + S   +F+ SF     +F  VF+   RL + S+  S
Sbjct: 376 LYNVLRFGAESQTINFMFSFGFILLRFLSVFESCTRLNNESRKPS 420


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 302 IASIVLVHNSRLYFKGHFVSFQ 237
           +AS+ L HNS+L  + + +SFQ
Sbjct: 420 LASLNLGHNSQLTLEINGLSFQ 441


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,499
Number of Sequences: 336
Number of extensions: 2817
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)