Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30366
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 92 5e-20
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 49 5e-07
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 49 5e-07
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.41
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 28 1.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.2
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 27 2.2
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 27 2.9
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 3.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.7
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.7
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 25 8.9
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 8.9
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 92.3 bits (219), Expect = 5e-20
Identities = 43/79 (54%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
MR+ TCYFCS VYPGHGI FVRND K+FRFCRSKCH F AYRK G
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 206 KELSIDPSFEF-EKRRNGP 259
KE+ D + RRN P
Sbjct: 61 KEMVYDTALAVTAARRNVP 79
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +1
Query: 256 PLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSP 435
P++Y+R + T+ AMK+V ++ +R + +RL R E Q + + +++ P
Sbjct: 79 PVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQFTEP 138
Query: 436 AAGLKQRQALEATEMEVEPETIE 504
++ + E + E T+E
Sbjct: 139 EGEVETAEVQEPQIVSDEEYTME 161
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
M++E C F S+VYPG G FVR D K+FRF K + F YR+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 206 KELS 217
K +S
Sbjct: 61 KGIS 64
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
M++E C F S+VYPG G FVR D K+FRF K + F YR+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 206 KELS 217
K +S
Sbjct: 61 KGIS 64
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 508 QLLWSRVRLPFLWLLKLVAVSDQPLVTLSKRCLSGLLARLFATLPLCPVSIA 353
QL W R+ +PF L + V+D L+TL K G+ +L PL V+++
Sbjct: 880 QLHWKRLEVPFEKTLWNIVVADPYLLTL-KLTAEGIFKQLEDCYPLREVTVS 930
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 459 SFRSHRNGSRTRDHRSWDAKRQETDY*GSGHGTCNRGV 572
SFRS R S + H + R ET+ S H N G+
Sbjct: 34 SFRSSRQSSVSNGHGLYSLDRDETESLMSSHEASNAGI 71
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +1
Query: 337 NNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEV 507
N++++QR R+ R E + + +I L Q+Q +E+ +++ P+ +++
Sbjct: 116 NDFLLQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKL 172
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 426 KVTSGWSETATSFRSHRNGSRTRDHRSWDAKRQETD 533
K + +++ T+FR H D RSW K+Q D
Sbjct: 743 KSVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPID 778
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 36 KHVISVHPGFILDTESNLSGMTAKFSD---SVVQNATQRLK 149
KH++ V F L +E LS AKF + ++ A QRL+
Sbjct: 39 KHILKVQRHFNLISEDELSARQAKFEEIVKPILSKAFQRLE 79
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 623 LASFTLTTIQYHHPSSINSPVAGTMTGASIICFLPFSVPTSMVSGSTSISVA 468
L S T H P++ NSP+ S + +LP S+P + + ISVA
Sbjct: 371 LPSVAYTPPVMHIPTT-NSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVA 421
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 436 AAGLKQRQALEATEMEVEPETIEVGTLKGRKQIIEAPVMVPATG 567
A G + T EV+P T GT Q+ A + P TG
Sbjct: 1212 ATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTTG 1255
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 436 AAGLKQRQALEATEMEVEPETIEVGTLKGRKQIIEAPVMVPATG 567
A G + T EV+P T GT Q+ A + P TG
Sbjct: 1294 ATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTTG 1337
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 588 PPFFNQLPCCRYHDRSLN 535
P FF QLP +H RS+N
Sbjct: 215 PSFFPQLPTPSFHRRSIN 232
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = -2
Query: 390 SLPLYLSALSQSLHNIIITPSLSNLFHFLHSFDCFSPQF 274
S+P + + NI++ L ++++ + C SP F
Sbjct: 43 SIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHF 81
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 397 REVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVGTL-KGRKQIIEAPVMVPATGEL 573
R Q L K A K++Q + E + + ++ + KG+K++ E PV P T +
Sbjct: 262 RSAQNSAKLEKEKA---KEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPI 318
Query: 574 I 576
+
Sbjct: 319 L 319
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 247 TKWPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
++W L ++++ + +EA K R S Y++Q + G E E+
Sbjct: 178 SRWYLPFDKDDDNQLVEAYAKYFSSENRPSIFYVLQGISFGPECEY 223
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 313 EEIRQRRSNNYIMQRLRQGREVEWQR 390
+ IR+ +SN+ ++QRL QG E + R
Sbjct: 168 QSIRKAKSNSGLIQRLLQGTEQDKAR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,214
Number of Sequences: 5004
Number of extensions: 50797
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -