Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30366
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 46 2e-05
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 31 0.76
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 30 1.3
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 29 2.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 29 3.1
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 4.1
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) 28 7.1
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27) 27 9.4
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 27 9.4
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39) 27 9.4
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAA 142
M++E C + ++YPGHG ++VR D K+F F +C A
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERA 39
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +2
Query: 185 AYRKTAGKELSIDPSFEFEKRRNGP 259
A+RK AGK+L+ID +FEFEK+RN P
Sbjct: 13 AFRKAAGKDLAIDSTFEFEKKRNVP 37
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 241 KETKWPLKYNRELWTKTIEAMK 306
K+ P+KYNRELW+ T E++K
Sbjct: 32 KKRNVPVKYNRELWSNT-ESLK 52
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 590 HHPS--SINSPVAGTMT--GASIICFLPFSVPTSMVSGSTSISVASKACRCFRPAAGDFI 423
HHP+ S++ P + G S +C LPF+ P S SGS + S P+A + +
Sbjct: 264 HHPNTQSVDEPNQASCLSFGGSPLCNLPFTTPYSFPSGSKKRNSKSP-----HPSAPNRL 318
Query: 422 KEMSLWTS 399
+ S W+S
Sbjct: 319 ADPSQWSS 326
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 31.1 bits (67), Expect = 0.76
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +1
Query: 244 ETKWPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDV---REVQRD 414
ET+W RE + ++ + + +R+ + + L +GR+ E + +R
Sbjct: 1778 ETQWAALSERERQARLVKLKLQEKRLREDGKLDEASRLLGEGRKHEAGLRALIGQSKERQ 1837
Query: 415 ISLIKSPAAGLKQRQALEATEMEVEPETIEVGTLKGRKQIIEAPVMVPATGELIEE 582
L+K L+QR+A + E ET+E+ G + +++ V+ TGE + E
Sbjct: 1838 QQLLKERLEKLRQRKASGEVVNDDELETLEMIEANGIES-VDSVVLDRITGETVAE 1892
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 348 YAAIETGQRGRVAKR---RARSPERHLFDKVTSGWSETATSFRSHRNGSRTRDHRSWDAK 518
Y A++ ++ + + R R+RSP R WS + + SH + SR+ WD
Sbjct: 323 YRALQRSRQHKPSSRNTSRSRSPVRSRSPIHPRSWSRSVSHSLSHSSASRSPTPEDWDRS 382
Query: 519 R 521
R
Sbjct: 383 R 383
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 298 AMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
AMKK++E R+ +++ + E +++RE +RD +K+ L Q +
Sbjct: 1386 AMKKLQEARESEGKELVLRTEEIEKLYERNKELREKERDYEELKTKMRDLSQTE 1439
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +1
Query: 295 EAMKKVEEIRQRRSNNYIMQ---RLRQGREVEWQRDVREVQRDISLIKSPA-AGLKQRQA 462
E KK EE R+RR + + R R+ + QRD ++R + K K
Sbjct: 193 ELRKKREEARKRREEKLAEKESSKSRNKRKSKEQRDEPSLKRSTATPKKTRKTAAKDSSE 252
Query: 463 LE----ATEMEVEPETIEVGTLKGRKQIIEAP 546
+E A E EP + + KGRK + +AP
Sbjct: 253 VERIRGAGESSSEPSSKRSQSTKGRKNVNKAP 284
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 369 QRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSRTRDHRSWDAKRQETD 533
++GR ++ R + E + D T S + RSHR+GSR R D + D
Sbjct: 5244 KKGRSSRHRHHNSEG-IGDDDTDNTSSSTAPTRSHRHGSRGRHRNEEDIGDDDAD 5297
>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
Length = 858
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 150 FLNAAWHFERQNLKILQSFRTNWI 79
+L + WHFER NL ++ ++WI
Sbjct: 511 YLRSIWHFERLNLWLILILGSSWI 534
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 41 CYFCSSRVYPGHGIQFVRNDCKIFRF--CRSKCHA 139
C FC+S+VYP +F +C ++ C + H+
Sbjct: 410 CNFCASKVYPPKPARFFCTECAVYSCGNCSDEIHS 444
>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
Length = 709
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 12 LKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 191
++P+K +H+ H F+ + L G+T KF D + + +R IP L+ +
Sbjct: 264 VRPLK---EHISCAHKCFVFQILAKLRGITRKFVDYAEKAKLRASAQRVIPEALSAVSKA 320
Query: 192 V 194
V
Sbjct: 321 V 321
>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
Length = 510
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 93 GMTAKFSDSVVQNATQRLKRRRIPVKLNGLKL--TVRLRVRNCL*THPLSLKR 245
G A+ + ++N L R+RI LNG+K+ +RL +N P+ KR
Sbjct: 139 GEGARKLNPTIRNIYAGLSRKRIEETLNGMKVPNEIRLLFQNKAPLRPIKAKR 191
>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
Length = 172
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/69 (27%), Positives = 39/69 (56%)
Frame = +1
Query: 280 WTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
W K+ ++K +E + R+ +QR RE+E+ R +E++R +I+ +K+R+
Sbjct: 97 WLKS--SVKLLESALRERNKQMDIQR----REIEFLR--KELRRKDEVIREYENIIKERE 148
Query: 460 ALEATEMEV 486
+E E+E+
Sbjct: 149 DMEKRELEI 157
>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
Length = 747
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 623 LASFTLTTIQYHHPSSINSPVAGTMTGASIICFLPFSV 510
+ S T+ TIQ + + ++TG ICF PF++
Sbjct: 512 ICSETVETIQGREEKKKLAKLLASVTGVYFICFAPFAI 549
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 81 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 215
S++ K +V+QN T RL PV +G+K RL V++C
Sbjct: 854 SSIGTAGIKAITNVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 897
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,762
Number of Sequences: 59808
Number of extensions: 365756
Number of successful extensions: 1130
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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