Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30366
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative 105 3e-23
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 50 2e-06
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A) 50 2e-06
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 30 1.4
At1g76870.1 68414.m08945 hypothetical protein 30 1.4
At1g28570.1 68414.m03517 GDSL-motif lipase, putative similar to ... 30 1.4
At2g42210.1 68415.m05224 mitochondrial import inner membrane tra... 28 4.4
At5g38590.2 68418.m04666 F-box family protein contains F-box dom... 28 5.8
At5g38590.1 68418.m04667 F-box family protein contains F-box dom... 28 5.8
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 28 5.8
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 27 7.7
>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
Length = 159
Score = 105 bits (251), Expect = 3e-23
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
MR+E C+FCSS +YPGHGIQFVRND KIFRFCRSKCH F A+R G
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 206 KELSIDPSFEFEKRRNGP 259
K+++ D +FEFEK+RN P
Sbjct: 61 KDMTKDTTFEFEKKRNRP 78
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +1
Query: 241 KETKWPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDIS 420
K+ P +Y+R + T+ A+KK+ +IR R +I RL+ ++ + D++E+ ++I
Sbjct: 73 KKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIH 132
Query: 421 LIKSPAAGLKQRQALEATEME-VEPETIE 504
++++P A Q+ ++ +E + V+ E +E
Sbjct: 133 MVQAPGA---QKIKVDVSEKKSVQNEAME 158
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
++ E C F ++YPG GI+F+R+D ++F F SKC F YRK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62
Query: 206 KE 211
K+
Sbjct: 63 KD 64
>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
Length = 164
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2
Query: 26 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 205
++ E C F ++YPG GI+F+R+D ++F F SKC F YRK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62
Query: 206 KE 211
K+
Sbjct: 63 KD 64
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 373 EVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVGTLK--GRKQIIEAP 546
E+ W+ + + QR KQ++ALE ++VE V + RK I EAP
Sbjct: 914 ELTWRLQLEKRQRTELEEAKTQEYAKQQEALETMRLQVEEANAAVIREREAARKAIEEAP 973
Query: 547 VMVPATGELIEE 582
++ T L+E+
Sbjct: 974 PVIKETPVLVED 985
>At1g76870.1 68414.m08945 hypothetical protein
Length = 385
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 388 RDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEV 507
R +V R ISL AAGL QRQ +E+ +E+E +++
Sbjct: 292 RSQADVNRGISLDSRKAAGL-QRQQIESKSLELEGRKLQI 330
>At1g28570.1 68414.m03517 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains
InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
family
Length = 384
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -2
Query: 429 LYQRDVSLDFSHVSLPLYLSALSQSLHNIIITPS 328
L +R + +++VSL + LS+ +SL N+ ++PS
Sbjct: 121 LEERGIHFPYTNVSLAVQLSSFKESLPNLCVSPS 154
>At2g42210.1 68415.m05224 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|P25710 NADH-ubiquinone
oxidoreductase 21.3 kDa subunit (EC 1.6.5.3) (EC
1.6.99.3) {Neurospora crassa}, SP|Q12328 Mitochondrial
import inner membrane translocase subunit TIM22
{Saccharomyces cerevisiae}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 159
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 572 NSPVAGTMTGASIICFLPFSVPTSMVSGST 483
N + G + GAS++ + S+PT++ +G+T
Sbjct: 94 NGAIGGFVAGASVLGYRARSIPTAIAAGAT 123
>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
Pfam:PF00646
Length = 410
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 456 SLFQTSRW*LYQRDVSL-DFSHVSLPLYLSALSQSL 352
+L TSRW DV L DF H +LPL+ + + +SL
Sbjct: 43 NLDYTSRWCRKPGDVGLRDFIHKNLPLHRAPVIESL 78
>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
Pfam:PF00646
Length = 289
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 456 SLFQTSRW*LYQRDVSL-DFSHVSLPLYLSALSQSL 352
+L TSRW DV L DF H +LPL+ + + +SL
Sbjct: 43 NLDYTSRWCRKPGDVGLRDFIHKNLPLHRAPVIESL 78
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 3 HTCLKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGL 182
+T K V H++ V P F+L T+S + +S SV N Q++ R +P+ + L
Sbjct: 34 NTLFKSKSFVNNHLVRVRPQFLLWTDSKM------YSVSVNLNDDQKIDMRELPLDIPYL 87
Query: 183 KLTVRLRVRNC 215
+R C
Sbjct: 88 NNFMRTYFTPC 98
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 268 NRELWTKTIEAMKKVEEIRQRR--SNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAA 441
NR+L + E +K+V EI+QR N L + RE Q +R+ + +S ++
Sbjct: 175 NRQLEQQMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQK-LH 233
Query: 442 GLKQRQALE 468
L Q Q E
Sbjct: 234 ELAQNQLFE 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,472
Number of Sequences: 28952
Number of extensions: 265423
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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